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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66823 (2 seq.)
>W1710799202
LJUK01000214
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2016
2103
+
Leu
TAA
[ENA]
¡û
>W1610663159
LJUK01000214
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2016
2103
+
Leu
TAA
[ENA]
¡û
Identical group No.141743 (2 seq.)
>W10127954
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
205
119
-
Leu
TAA
[ENA]
¡û
>W11135499
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
205
119
-
Leu
TAA
[ENA]
¡û
Identical group No.181911 (1 seq.)
>C09300009
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027640
1027556
-
Leu
TAA
[Ensembl]
¡û
Identical group No.190555 (12 seq.)
>W1711190240
LWRY01000037
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
21042
21126
+
Leu
TAA
[ENA]
¡û
>W1711190294
LWRZ01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
22610
22694
+
Leu
TAA
[ENA]
¡û
>W1711190399
LWSA01000031
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
31521
31437
-
Leu
TAA
[ENA]
¡û
>W1711190536
LWSB01000151
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
13745
13829
+
Leu
TAA
[ENA]
¡û
>W1711190627
LWSC01000230
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
45771
45687
-
Leu
TAA
[ENA]
¡û
>W1711190704
LWSD01000192
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
13745
13829
+
Leu
TAA
[ENA]
¡û
>W1711293117
LZYI01000003
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
45785
45701
-
Leu
TAA
[ENA]
¡û
>W1711585836
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1037292
1037208
-
Leu
TAA
[ENA]
¡û
>W141206757
AZMO01000002
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
45768
45684
-
Leu
TAA
[ENA]
¡û
>W141695608
JMEB01000300
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
30560
30476
-
Leu
TAA
[ENA]
¡û
>W11168541
AFOH01000082
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
57455
57539
+
Leu
TAA
[ENA]
¡û
>W1710743706
LGYM01000035
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
31900
31816
-
Leu
TAA
[ENA]
¡û
Identical group No.213607 (1 seq.)
>W131231785
AUIS01000020
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
6533
6617
+
Leu
TAA
[ENA]
¡û
Identical group No.215969 (1 seq.)
>W141738824
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
16964
17048
+
Leu
TAA
[ENA]
¡û
Identical group No.215970 (1 seq.)
>W141738827
JNNH01000078
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
447
531
+
Leu
TAA
[ENA]
¡û
Identical group No.220881 (6 seq.)
>W1711190337
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2804
2887
+
Leu
TAA
[ENA]
¡û
>W1711190457
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10370
10287
-
Leu
TAA
[ENA]
¡û
>W1711190520
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6277
6360
+
Leu
TAA
[ENA]
¡û
>W1711190730
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3825
3908
+
Leu
TAA
[ENA]
¡û
>W1711293139
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10388
10305
-
Leu
TAA
[ENA]
¡û
>W141206745
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135566
135649
+
Leu
TAA
[ENA]
¡û
Identical group No.226436 (1 seq.)
>W141695574
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17479
17396
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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