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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.43085 (2 seq.)
>W1710799202
LJUK01000214
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2016
2103
+
Leu
TAA
[ENA]
¡û
>W1610663159
LJUK01000214
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2016
2103
+
Leu
TAA
[ENA]
¡û
Identical group No.92498 (2 seq.)
>W10127954
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
205
119
-
Leu
TAA
[ENA]
¡û
>W11135499
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
205
119
-
Leu
TAA
[ENA]
¡û
Identical group No.119254 (1 seq.)
>C09300009
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027640
1027556
-
Leu
TAA
[Ensembl]
¡û
Identical group No.138251 (1 seq.)
>W131231785
AUIS01000020
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
6533
6617
+
Leu
TAA
[ENA]
¡û
Identical group No.139691 (1 seq.)
>W141738824
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
16964
17048
+
Leu
TAA
[ENA]
¡û
Identical group No.142828 (6 seq.)
>W1711190337
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2804
2887
+
Leu
TAA
[ENA]
¡û
>W1711190457
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
10370
10287
-
Leu
TAA
[ENA]
¡û
>W1711190520
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
6277
6360
+
Leu
TAA
[ENA]
¡û
>W1711190730
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
3825
3908
+
Leu
TAA
[ENA]
¡û
>W1711293139
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
10388
10305
-
Leu
TAA
[ENA]
¡û
>W141206745
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
135566
135649
+
Leu
TAA
[ENA]
¡û
Identical group No.146462 (1 seq.)
>W141695574
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
17479
17396
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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