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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181986 (1 seq.)
>C09100393
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033779
1033695
-
Leu
TAG
[Ensembl]
¡û
Identical group No.190553 (1 seq.)
>W1710743687
LGYM01000027
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
209491
209575
+
Leu
TAG
[ENA]
¡û
Identical group No.190980 (12 seq.)
>W1711190290
LWRY01000302
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
17102
17018
-
Leu
TAG
[ENA]
¡û
>W1711190390
LWRZ01000404
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7082
6998
-
Leu
TAG
[ENA]
¡û
>W1711190472
LWSA01000342
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
18144
18228
+
Leu
TAG
[ENA]
¡û
>W1711190538
LWSB01000159
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
10581
10665
+
Leu
TAG
[ENA]
¡û
>W1711190625
LWSC01000218
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
17102
17018
-
Leu
TAG
[ENA]
¡û
>W1711190692
LWSD01000156
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
11111
11195
+
Leu
TAG
[ENA]
¡û
>W1711293160
LZYI01000050
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
17400
17484
+
Leu
TAG
[ENA]
¡û
>W1711585812
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
1577982
1578066
+
Leu
TAG
[ENA]
¡û
>W141206789
AZMO01000048
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8661
8577
-
Leu
TAG
[ENA]
¡û
>W141695610
JMEB01000305
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
7435
7351
-
Leu
TAG
[ENA]
¡û
>W1910831853
MXAV01000039
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
12796
12712
-
Leu
TAG
[ENA]
¡û
>W11168531
AFOH01000044
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
26929
26845
-
Leu
TAG
[ENA]
¡û
Identical group No.198760 (4 seq.)
>W1710799192
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2106
2190
+
Leu
TAG
[ENA]
¡û
>W1710799764
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
2061
2145
+
Leu
TAG
[ENA]
¡û
>W1610663149
LJUK01000117
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
2106
2190
+
Leu
TAG
[ENA]
¡û
>W1610663721
LJVB01000066
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
2061
2145
+
Leu
TAG
[ENA]
¡û
Identical group No.210186 (2 seq.)
>W1710798677
LJTU01000059
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
6279
6195
-
Leu
TAG
[ENA]
¡û
>W1610662634
LJTU01000059
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
6279
6195
-
Leu
TAG
[ENA]
¡û
Identical group No.213605 (1 seq.)
>W131231762
AUIS01000004
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
55627
55711
+
Leu
TAG
[ENA]
¡û
Identical group No.215971 (1 seq.)
>W141738831
JNNH01000185
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
1566
1482
-
Leu
TAG
[ENA]
¡û
Identical group No.216909 (2 seq.)
>W1711168370
LVXZ01000261
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
2531
2615
+
Leu
TAG
[ENA]
¡û
>W1610978285
LVXZ01000261
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
2531
2615
+
Leu
TAG
[ENA]
¡û
Identical group No.220882 (7 seq.)
>W1711190346
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7896
7979
+
Leu
TAG
[ENA]
¡û
>W1711190466
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
5278
5195
-
Leu
TAG
[ENA]
¡û
>W1711190529
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
11369
11452
+
Leu
TAG
[ENA]
¡û
>W1711190677
LWSD01000073
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16986
16903
-
Leu
TAG
[ENA]
¡û
>W1711293148
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
5296
5213
-
Leu
TAG
[ENA]
¡û
>W141206754
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
140658
140741
+
Leu
TAG
[ENA]
¡û
>W141695583
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
12388
12305
-
Leu
TAG
[ENA]
¡û
Identical group No.261580 (2 seq.)
>W10127969
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1160
1083
-
Leu
TAG
[ENA]
¡û
>W11135514
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
1160
1083
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK