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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158430 (9 seq.)
>W1711169865
LVZL01000011
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
5346
5261
-
Leu
TAG
[ENA]
¡û
>W1711312179
MASQ01000097
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
42759
42844
+
Leu
TAG
[ENA]
¡û
>W141262943
CCCS020000049
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
195614
195529
-
Leu
TAG
[ENA]
¡û
>WENV170008347
AOMP01000162
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
3196
3281
+
Leu
TAG
[ENA]
¢þ
>WENV170008443
AOMP01006287
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
61
146
+
Leu
TAG
[ENA]
¢þ
>WENV170008506
AOMQ01001034
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
88
3
-
Leu
TAG
[ENA]
¢þ
>C11100755
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1205365
1205280
-
Leu
TAG
[Ensembl]
¡û
>W11164289
AFJD01000013
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
1600
1515
-
Leu
TAG
[ENA]
¡û
>W1611057380
MASQ01000097
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
42759
42844
+
Leu
TAG
[ENA]
¡û
Identical group No.181026 (12 seq.)
>W1711220185
LXQG01000049
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
4230
4314
+
Leu
TAG
[ENA]
¡û
>W1711292989
LZYE01000386
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
4600
4684
+
Leu
TAG
[ENA]
¡û
>W1711293018
LZYF01000251
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
4291
4375
+
Leu
TAG
[ENA]
¡û
>W1711293074
LZYG01000370
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
4275
4359
+
Leu
TAG
[ENA]
¡û
>W1711293081
LZYH01000252
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
4251
4335
+
Leu
TAG
[ENA]
¡û
>WENV181406535
OGCG01000420
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
16400
16316
-
Leu
TAG
[ENA]
¢þ
>WENV170668471
LAFJ01013901
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
150
234
+
Leu
TAG
[ENA]
¢þ
>C181130837
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
869448
869364
-
Leu
TAG
-
¡û
>W09134915
ACVD01000073
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
69007
68923
-
Leu
TAG
[ENA]
¡û
>C151007975
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
950551
950467
-
Leu
TAG
[Ensembl]
¡û
>C11100516
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
972773
972689
-
Leu
TAG
[Ensembl]
¡û
>W1611004657
LXQG01000049
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
4230
4314
+
Leu
TAG
[ENA]
¡û
Identical group No.181907 (13 seq.)
>W1710777665
LJBT01000095
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
113350
113434
+
Leu
TAG
[ENA]
¡û
>W1711010501
LQRJ01000077
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
44766
44850
+
Leu
TAG
[ENA]
¡û
>C08000411
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1848940
1849024
+
Leu
TAG
[Ensembl]
¡û
>C191005099
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
339612
339696
+
Leu
TAG
-
¡û
>C09100364
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1963407
1963491
+
Leu
TAG
[Ensembl]
¡û
>W1810257115
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
26444
26360
-
Leu
TAG
[ENA]
¡û
>W1810679307
QKQP01000012
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
23640
23556
-
Leu
TAG
[ENA]
¡û
>W10127980
AEFB01000639
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
4335
4251
-
Leu
TAG
[ENA]
¡û
>W11135525
AEFB01000639
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
4335
4251
-
Leu
TAG
[ENA]
¡û
>W1610627888
LIEB01000010
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
113088
113172
+
Leu
TAG
[ENA]
¡û
>W1610641851
LJBT01000095
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
113350
113434
+
Leu
TAG
[ENA]
¡û
>W1610859021
LQRJ01000077
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
44766
44850
+
Leu
TAG
[ENA]
¡û
>W1710759015
LIEB01000010
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
113088
113172
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK