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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TCG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161580 (7 seq.)
>W1711190343
LWRZ01000058
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
6214
6291
+
Arg
TCG
[ENA]
¡û
>W1711190463
LWSA01000290
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
6960
6883
-
Arg
TCG
[ENA]
¡û
>W1711190526
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
9687
9764
+
Arg
TCG
[ENA]
¡û
>W1711190736
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
7235
7312
+
Arg
TCG
[ENA]
¡û
>W1711293145
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
6978
6901
-
Arg
TCG
[ENA]
¡û
>W141206751
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
138976
139053
+
Arg
TCG
[ENA]
¡û
>W141695580
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
14068
13991
-
Arg
TCG
[ENA]
¡û
Identical group No.209780 (9 seq.)
>W1711190253
LWRY01000053
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
12651
12575
-
Arg
TCG
[ENA]
¡û
>W1711190328
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
23029
23105
+
Arg
TCG
[ENA]
¡û
>W1711190432
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
4909
4833
-
Arg
TCG
[ENA]
¡û
>W1711190560
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
4941
4865
-
Arg
TCG
[ENA]
¡û
>W1711190608
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
11078
11002
-
Arg
TCG
[ENA]
¡û
>W1711190669
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
18844
18920
+
Arg
TCG
[ENA]
¡û
>W1711293194
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
4927
4851
-
Arg
TCG
[ENA]
¡û
>W141206817
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
4838
4762
-
Arg
TCG
[ENA]
¡û
>W1710743670
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
25568
25644
+
Arg
TCG
[ENA]
¡û
Identical group No.289061 (1 seq.)
>C09100410
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1027301
1027226
-
Arg
TCG
[Ensembl]
¡û
Identical group No.393279 (1 seq.)
>W141738825
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
17052
17127
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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