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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183605 (1 seq.)
>C09100391
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1034209
1034133
-
Pro
TGG
[Ensembl]
¡û
Identical group No.209777 (9 seq.)
>W1711190271
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
7324
7248
-
Pro
TGG
[ENA]
¡û
>W1711190310
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
19273
19349
+
Pro
TGG
[ENA]
¡û
>W1711190414
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
8665
8589
-
Pro
TGG
[ENA]
¡û
>W1711190542
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
8697
8621
-
Pro
TGG
[ENA]
¡û
>W1711190590
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
14834
14758
-
Pro
TGG
[ENA]
¡û
>W1711190651
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
15088
15164
+
Pro
TGG
[ENA]
¡û
>W1711293176
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
8683
8607
-
Pro
TGG
[ENA]
¡û
>W141206799
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
8594
8518
-
Pro
TGG
[ENA]
¡û
>W1710743652
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
21812
21888
+
Pro
TGG
[ENA]
¡û
Identical group No.210977 (6 seq.)
>W1711190360
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
7807
7883
+
Pro
TGG
[ENA]
¡û
>W1711190502
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
487
563
+
Pro
TGG
[ENA]
¡û
>W1711190712
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1934
1858
-
Pro
TGG
[ENA]
¡û
>W1711293121
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
16178
16102
-
Pro
TGG
[ENA]
¡û
>W141206727
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
129776
129852
+
Pro
TGG
[ENA]
¡û
>W141695556
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23592
23516
-
Pro
TGG
[ENA]
¡û
Identical group No.275711 (1 seq.)
>W143017349
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
9324
9400
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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