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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656701 (12 seq.)
>W1711220182
LXQG01000025
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
32549
32623
+
Gln
TTG
[ENA]
¡û
>W1711292986
LZYE01000363
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
12936
12862
-
Gln
TTG
[ENA]
¡û
>W1711293032
LZYF01000396
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
12936
12862
-
Gln
TTG
[ENA]
¡û
>W1711293078
LZYG01000373
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
12917
12843
-
Gln
TTG
[ENA]
¡û
>W1711293091
LZYH01000418
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
5749
5823
+
Gln
TTG
[ENA]
¡û
>WENV181406787
OGCG01001438
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2859
2785
-
Gln
TTG
[ENA]
¢þ
>WENV183688225
ORMF011258838
[ORMF] groundwater metagenome; groundwater
861
935
+
Gln
TTG
[ENA]
¢þ
>C181130842
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
387237
387163
-
Gln
TTG
-
¡û
>W09134906
ACVD01000064
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
50604
50530
-
Gln
TTG
[ENA]
¡û
>C151007980
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
492153
492079
-
Gln
TTG
[Ensembl]
¡û
>C11100521
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
474063
473989
-
Gln
TTG
[Ensembl]
¡û
>W1611004654
LXQG01000025
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
32549
32623
+
Gln
TTG
[ENA]
¡û
Identical group No.659381 (38 seq.)
>W1710777632
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
7558
7484
-
Gln
TTG
[ENA]
¡û
>W1711010475
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
7491
7417
-
Gln
TTG
[ENA]
¡û
>W1711168349
LVXZ01000107
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
17467
17541
+
Gln
TTG
[ENA]
¡û
>W1711169875
LVZL01000042
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
2596
2522
-
Gln
TTG
[ENA]
¡û
>W1711190229
LWRY01000015
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
42650
42724
+
Gln
TTG
[ENA]
¡û
>W1711190298
LWRZ01000011
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
36510
36584
+
Gln
TTG
[ENA]
¡û
>W1711190396
LWSA01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
9009
8935
-
Gln
TTG
[ENA]
¡û
>W1711190487
LWSB01000018
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
55697
55623
-
Gln
TTG
[ENA]
¡û
>W1711190575
LWSC01000004
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
42650
42724
+
Gln
TTG
[ENA]
¡û
>W1711190644
LWSD01000005
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
34345
34271
-
Gln
TTG
[ENA]
¡û
>W1711293202
LZYI01000139
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
4738
4664
-
Gln
TTG
[ENA]
¡û
>W1711312164
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
34027
34101
+
Gln
TTG
[ENA]
¡û
>W1711585818
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2408373
2408447
+
Gln
TTG
[ENA]
¡û
>WENV181295946
OFHJ01002571
[OFHJ] soil metagenome; Clay
474
548
+
Gln
TTG
[ENA]
¢þ
>W141206765
AZMO01000004
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
53560
53486
-
Gln
TTG
[ENA]
¡û
>W141262902
CCCS020000023
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
305854
305928
+
Gln
TTG
[ENA]
¡û
>C08000416
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
2356075
2356149
+
Gln
TTG
[Ensembl]
¡û
>WENV170008355
AOMP01000250
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
2349
2423
+
Gln
TTG
[ENA]
¢þ
>WENV170008501
AOMQ01000572
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
1165
1091
-
Gln
TTG
[ENA]
¢þ
>C191005104
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
697812
697886
+
Gln
TTG
-
¡û
>W141695547
JMEB01000081
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
10995
10921
-
Gln
TTG
[ENA]
¡û
>W141738850
JNNH01001038
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
1357
1431
+
Gln
TTG
[ENA]
¡û
>C09100369
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
2460871
2460945
+
Gln
TTG
[Ensembl]
¡û
>W1910831844
MXAV01000033
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
92420
92346
-
Gln
TTG
[ENA]
¡û
>W1810257123
PQJK01000002
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
96692
96618
-
Gln
TTG
[ENA]
¡û
>W1810679288
QKQP01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
286372
286446
+
Gln
TTG
[ENA]
¡û
>W10127990
AEFB01000997
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
4110
4184
+
Gln
TTG
[ENA]
¡û
>C11100759
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
555599
555525
-
Gln
TTG
[Ensembl]
¡û
>W11135535
AEFB01000997
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
4106
4180
+
Gln
TTG
[ENA]
¡û
>W11164291
AFJD01000016
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
55981
56055
+
Gln
TTG
[ENA]
¡û
>W11168521
AFOH01000030
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
10299
10225
-
Gln
TTG
[ENA]
¡û
>W1610627901
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
31579
31653
+
Gln
TTG
[ENA]
¡û
>W1610641818
LJBT01000005
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
7558
7484
-
Gln
TTG
[ENA]
¡û
>W1610858995
LQRJ01000045
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
7491
7417
-
Gln
TTG
[ENA]
¡û
>W1610978264
LVXZ01000107
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
17467
17541
+
Gln
TTG
[ENA]
¡û
>W1611057365
MASQ01000081
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
34027
34101
+
Gln
TTG
[ENA]
¡û
>W1710743708
LGYM01000036
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
179412
179486
+
Gln
TTG
[ENA]
¡û
>W1710759028
LIEB01000021
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
31579
31653
+
Gln
TTG
[ENA]
¡û
Identical group No.713052 (6 seq.)
>W1710799184
LJUK01000097
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
824
898
+
Gln
TTG
[ENA]
¡û
>W1710799747
LJVB01000005
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
31868
31794
-
Gln
TTG
[ENA]
¡û
>WENV180258371
OBEQ011001503
[OBEQ] groundwater metagenome; groundwater
486
412
-
Gln
TTG
[ENA]
¢þ
>WENV180262442
OBEQ011387110
[OBEQ] groundwater metagenome; groundwater
407499
407425
-
Gln
TTG
[ENA]
¢þ
>W1610663141
LJUK01000097
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
824
898
+
Gln
TTG
[ENA]
¡û
>W1610663704
LJVB01000005
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
31868
31794
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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