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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TTT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361034 (4 seq.)
>W1710799172
LJUK01000021
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
528
452
-
Lys
TTT
[ENA]
¡û
>W1710799781
LJVB01000139
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
5935
6011
+
Lys
TTT
[ENA]
¡û
>W1610663129
LJUK01000021
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
528
452
-
Lys
TTT
[ENA]
¡û
>W1610663738
LJVB01000139
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
5935
6011
+
Lys
TTT
[ENA]
¡û
Identical group No.441731 (1 seq.)
>W141738823
JNNH01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
16674
16750
+
Lys
TTT
[ENA]
¡û
Identical group No.458052 (11 seq.)
>W1711220194
LXQG01000057
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
61267
61342
+
Lys
TTT
[ENA]
¡û
>W1711292976
LZYE01000251
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
14970
14895
-
Lys
TTT
[ENA]
¡û
>W1711293034
LZYF01000398
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
14986
14911
-
Lys
TTT
[ENA]
¡û
>W1711293067
LZYG01000254
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
20563
20638
+
Lys
TTT
[ENA]
¡û
>W1711293109
LZYH01000773
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
115
40
-
Lys
TTT
[ENA]
¡û
>WENV181406289
OGCG01000083
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
52558
52633
+
Lys
TTT
[ENA]
¢þ
>C181130843
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
172301
172226
-
Lys
TTT
-
¡û
>W09134903
ACVD01000061
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
16879
16804
-
Lys
TTT
[ENA]
¡û
>C151007981
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
281261
281186
-
Lys
TTT
[Ensembl]
¡û
>C11100522
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
262878
262803
-
Lys
TTT
[Ensembl]
¡û
>W1611004666
LXQG01000057
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
61267
61342
+
Lys
TTT
[ENA]
¡û
Identical group No.462523 (22 seq.)
>W1710777637
LJBT01000011
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26614
26539
-
Lys
TTT
[ENA]
¡û
>W1711010482
LQRJ01000058
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
51593
51518
-
Lys
TTT
[ENA]
¡û
>W1711168336
LVXZ01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9398
9323
-
Lys
TTT
[ENA]
¡û
>W1711169869
LVZL01000028
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
29618
29543
-
Lys
TTT
[ENA]
¡û
>W1711312154
MASQ01000060
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4821
4746
-
Lys
TTT
[ENA]
¡û
>W141262947
CCCS020000052
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
58043
57968
-
Lys
TTT
[ENA]
¡û
>C08000391
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
85796
85871
+
Lys
TTT
[Ensembl]
¡û
>WENV170008354
AOMP01000244
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
79
154
+
Lys
TTT
[ENA]
¢þ
>WENV170008629
AOMQ01009358
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
24
99
+
Lys
TTT
[ENA]
¢þ
>C191005126
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1289524
1289449
-
Lys
TTT
-
¡û
>W141738845
JNNH01000992
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
2787
2712
-
Lys
TTT
[ENA]
¡û
>C09100344
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
83988
84063
+
Lys
TTT
[Ensembl]
¡û
>W1810257120
PQJK01000002
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
305576
305651
+
Lys
TTT
[ENA]
¡û
>W1810679297
QKQP01000006
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
213651
213726
+
Lys
TTT
[ENA]
¡û
>C11100762
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
83198
83123
-
Lys
TTT
[Ensembl]
¡û
>W11164256
AFJD01000001
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
278212
278287
+
Lys
TTT
[ENA]
¡û
>W1610627899
LIEB01000018
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
26588
26513
-
Lys
TTT
[ENA]
¡û
>W1610641823
LJBT01000011
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26614
26539
-
Lys
TTT
[ENA]
¡û
>W1610859002
LQRJ01000058
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
51593
51518
-
Lys
TTT
[ENA]
¡û
>W1610978251
LVXZ01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9398
9323
-
Lys
TTT
[ENA]
¡û
>W1611057355
MASQ01000060
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4821
4746
-
Lys
TTT
[ENA]
¡û
>W1710759026
LIEB01000018
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
26588
26513
-
Lys
TTT
[ENA]
¡û
Identical group No.462525 (1 seq.)
>C09100407
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1028045
1027970
-
Lys
TTT
[Ensembl]
¡û
Identical group No.490921 (1 seq.)
>W141262929
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
239587
239512
-
Lys
TTT
[ENA]
¡û
Identical group No.508429 (9 seq.)
>W1711190277
LWRY01000155
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
6283
6208
-
Lys
TTT
[ENA]
¡û
>W1711190316
LWRZ01000029
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
20314
20389
+
Lys
TTT
[ENA]
¡û
>W1711190420
LWSA01000143
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
7624
7549
-
Lys
TTT
[ENA]
¡û
>W1711190548
LWSB01000182
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
7656
7581
-
Lys
TTT
[ENA]
¡û
>W1711190596
LWSC01000048
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
13793
13718
-
Lys
TTT
[ENA]
¡û
>W1711190657
LWSD01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
16129
16204
+
Lys
TTT
[ENA]
¡û
>W1711293182
LZYI01000116
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
7642
7567
-
Lys
TTT
[ENA]
¡û
>W141206805
AZMO01000080
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
7553
7478
-
Lys
TTT
[ENA]
¡û
>W1710743658
LGYM01000007
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
22853
22928
+
Lys
TTT
[ENA]
¡û
Identical group No.508435 (13 seq.)
>W1711190264
LWRY01000121
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
979
904
-
Lys
TTT
[ENA]
¡û
>W1711190349
LWRZ01000099
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2551
2476
-
Lys
TTT
[ENA]
¡û
>W1711190407
LWSA01000095
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
63501
63576
+
Lys
TTT
[ENA]
¡û
>W1711190476
LWSB01000002
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
5483
5408
-
Lys
TTT
[ENA]
¡û
>W1711190616
LWSC01000110
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
11510
11585
+
Lys
TTT
[ENA]
¡û
>W1711190680
LWSD01000091
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
2152
2077
-
Lys
TTT
[ENA]
¡û
>W1711293172
LZYI01000092
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
30050
30125
+
Lys
TTT
[ENA]
¡û
>W1711585821
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
2669907
2669832
-
Lys
TTT
[ENA]
¡û
>W141206771
AZMO01000009
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
5620
5695
+
Lys
TTT
[ENA]
¡û
>W141695611
JMEB01000309
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
5693
5768
+
Lys
TTT
[ENA]
¡û
>W1910831839
MXAV01000027
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
7735
7810
+
Lys
TTT
[ENA]
¡û
>W11168536
AFOH01000058
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
5315
5240
-
Lys
TTT
[ENA]
¡û
>W1710743699
LGYM01000032
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
5323
5248
-
Lys
TTT
[ENA]
¡û
Identical group No.510582 (6 seq.)
>W1711190370
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
9638
9713
+
Lys
TTT
[ENA]
¡û
>W1711190512
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
2318
2393
+
Lys
TTT
[ENA]
¡û
>W1711190722
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
103
28
-
Lys
TTT
[ENA]
¡û
>W1711293131
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
14347
14272
-
Lys
TTT
[ENA]
¡û
>W141206737
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
131607
131682
+
Lys
TTT
[ENA]
¡û
>W141695566
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
21769
21694
-
Lys
TTT
[ENA]
¡û
Identical group No.551284 (4 seq.)
>W1710799203
LJUK01000215
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
87
12
-
Lys
TTT
[ENA]
¡û
>W1710799783
LJVB01000140
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
2367
2442
+
Lys
TTT
[ENA]
¡û
>W1610663160
LJUK01000215
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
87
12
-
Lys
TTT
[ENA]
¡û
>W1610663740
LJVB01000140
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
2367
2442
+
Lys
TTT
[ENA]
¡û
Identical group No.597185 (2 seq.)
>W10127952
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
607
532
-
Lys
TTT
[ENA]
¡û
>W11135497
AEFB01000012
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
607
532
-
Lys
TTT
[ENA]
¡û
Identical group No.629922 (1 seq.)
>W131231770
AUIS01000010
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
9553
9478
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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