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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458052 (11 seq.)
>W1711220194
LXQG01000057
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
61267
61342
+
Lys
TTT
[ENA]
¡û
>W1711292976
LZYE01000251
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
14970
14895
-
Lys
TTT
[ENA]
¡û
>W1711293034
LZYF01000398
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
14986
14911
-
Lys
TTT
[ENA]
¡û
>W1711293067
LZYG01000254
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
20563
20638
+
Lys
TTT
[ENA]
¡û
>W1711293109
LZYH01000773
Acidithiobacillia
Acidithiobacillus caldus [LZYH]
115
40
-
Lys
TTT
[ENA]
¡û
>WENV181406289
OGCG01000083
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
52558
52633
+
Lys
TTT
[ENA]
¢þ
>C181130843
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
172301
172226
-
Lys
TTT
-
¡û
>W09134903
ACVD01000061
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
16879
16804
-
Lys
TTT
[ENA]
¡û
>C151007981
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
281261
281186
-
Lys
TTT
[Ensembl]
¡û
>C11100522
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
262878
262803
-
Lys
TTT
[Ensembl]
¡û
>W1611004666
LXQG01000057
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
61267
61342
+
Lys
TTT
[ENA]
¡û
Identical group No.462523 (22 seq.)
>W1710777637
LJBT01000011
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26614
26539
-
Lys
TTT
[ENA]
¡û
>W1711010482
LQRJ01000058
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
51593
51518
-
Lys
TTT
[ENA]
¡û
>W1711168336
LVXZ01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9398
9323
-
Lys
TTT
[ENA]
¡û
>W1711169869
LVZL01000028
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
29618
29543
-
Lys
TTT
[ENA]
¡û
>W1711312154
MASQ01000060
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4821
4746
-
Lys
TTT
[ENA]
¡û
>W141262947
CCCS020000052
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
58043
57968
-
Lys
TTT
[ENA]
¡û
>C08000391
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
85796
85871
+
Lys
TTT
[Ensembl]
¡û
>WENV170008354
AOMP01000244
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
79
154
+
Lys
TTT
[ENA]
¢þ
>WENV170008629
AOMQ01009358
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
24
99
+
Lys
TTT
[ENA]
¢þ
>C191005126
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
1289524
1289449
-
Lys
TTT
-
¡û
>W141738845
JNNH01000992
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
2787
2712
-
Lys
TTT
[ENA]
¡û
>C09100344
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
83988
84063
+
Lys
TTT
[Ensembl]
¡û
>W1810257120
PQJK01000002
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
305576
305651
+
Lys
TTT
[ENA]
¡û
>W1810679297
QKQP01000006
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
213651
213726
+
Lys
TTT
[ENA]
¡û
>C11100762
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
83198
83123
-
Lys
TTT
[Ensembl]
¡û
>W11164256
AFJD01000001
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
278212
278287
+
Lys
TTT
[ENA]
¡û
>W1610627899
LIEB01000018
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
26588
26513
-
Lys
TTT
[ENA]
¡û
>W1610641823
LJBT01000011
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
26614
26539
-
Lys
TTT
[ENA]
¡û
>W1610859002
LQRJ01000058
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
51593
51518
-
Lys
TTT
[ENA]
¡û
>W1610978251
LVXZ01000043
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
9398
9323
-
Lys
TTT
[ENA]
¡û
>W1611057355
MASQ01000060
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
4821
4746
-
Lys
TTT
[ENA]
¡û
>W1710759026
LIEB01000018
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
26588
26513
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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