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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteria
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462611 (10 seq.)
>WENV180017451
FSXA01000525
[FSXA] metagenome; soil
3738
3813
+
Cys
GCA
[ENA]
¢þ
>WENV181191754
OEPS010193465
[OEPS] soil metagenome; soil
241
316
+
Cys
GCA
[ENA]
¢þ
>WENV183093207
OLLV01000217
[OLLV] soil metagenome; soil
117182
117257
+
Cys
GCA
[ENA]
¢þ
>WENV183697622
OUNK010004852
[OUNK] metagenome; soil
4830
4905
+
Cys
GCA
[ENA]
¢þ
>W1910548820
FZOU01000004
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
90303
90378
+
Cys
GCA
[ENA]
¡û
>W10119536
ADVY01000021
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
10044
9969
-
Cys
GCA
[ENA]
¡û
>C11100562
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
872506
872431
-
Cys
GCA
[Ensembl]
¡û
>W11125802
ADVY01000021
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
10044
9969
-
Cys
GCA
[ENA]
¡û
>W1710539061
FNVA01000006
Acidobacteriota
Bryocella elongata [FNVA]
154850
154775
-
Cys
GCA
[ENA]
¡û
>W1710575734
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
18155
18230
+
Cys
GCA
[ENA]
¡û
Identical group No.659428 (33 seq.)
>W1711502610
MKSV01000011
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
90992
91066
+
Cys
GCA
[ENA]
¡û
>W131179184
ARME01000007
Acidobacteriota
Acidobacteriaceae bacterium KBS 89 [ARME]
934653
934727
+
Cys
GCA
[ENA]
¡û
>W131216829
ATWD01000003
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
277648
277574
-
Cys
GCA
[ENA]
¡û
>WENV180017475
FSXA01001111
[FSXA] metagenome; soil
6
80
+
Cys
GCA
[ENA]
¢þ
>WENV180017483
FSXA01001257
[FSXA] metagenome; soil
9245
9319
+
Cys
GCA
[ENA]
¢þ
>WENV180017553
FSXH01000078
[FSXH] metagenome; soil
80
6
-
Cys
GCA
[ENA]
¢þ
>WENV180017872
FSXT01000222
[FSXT] metagenome; soil
2668
2742
+
Cys
GCA
[ENA]
¢þ
>WENV183093065
OLLR01000111
[OLLR] soil metagenome; soil
86673
86599
-
Cys
GCA
[ENA]
¢þ
>WENV183093202
OLLV01000208
[OLLV] soil metagenome; soil
1610
1536
-
Cys
GCA
[ENA]
¢þ
>WENV183697550
OUNK010001026
[OUNK] metagenome; soil
3195
3121
-
Cys
GCA
[ENA]
¢þ
>WENV183697851
OUNK010195276
[OUNK] metagenome; soil
13183
13109
-
Cys
GCA
[ENA]
¢þ
>WENV183697906
OUNK010317221
[OUNK] metagenome; soil
1
75
+
Cys
GCA
[ENA]
¢þ
>WENV183697982
OUNK010614618
[OUNK] metagenome; soil
356
282
-
Cys
GCA
[ENA]
¢þ
>WENV170008594
AOMQ01004929
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
286
212
-
Cys
GCA
[ENA]
¢þ
>C181193332
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
997126
997052
-
Cys
GCA
-
¡û
>W141557318
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
41186
41112
-
Cys
GCA
[ENA]
¡û
>W141817037
JQKI01000022
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
16142
16068
-
Cys
GCA
[ENA]
¡û
>W1910548809
FZOU01000002
Acidobacteriota
Granulicella rosea DSM 18704 [FZOU]
535856
535930
+
Cys
GCA
[ENA]
¡û
>W10119498
ADVX01000016
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
66918
66992
+
Cys
GCA
[ENA]
¡û
>W10119506
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
292298
292224
-
Cys
GCA
[ENA]
¡û
>C11100558
CP002480
Acidobacteriota
Granulicella tundricola MP5ACTX9 [CP002480]
2039628
2039554
-
Cys
GCA
[Ensembl]
¡û
>C11122997
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3043995
3044069
+
Cys
GCA
[Ensembl]
¡û
>W1511432659
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
540666
540740
+
Cys
GCA
[ENA]
¡û
>W11125764
ADVX01000016
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
66918
66992
+
Cys
GCA
[ENA]
¡û
>W11125772
ADVY01000001
Acidobacteria
Acidobacterium sp. MP5ACTX9 [ADVY] MP5ACTX9 [ADVY]
292298
292224
-
Cys
GCA
[ENA]
¡û
>W11137269
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3100278
3100352
+
Cys
GCA
[ENA]
¡û
>C121006507
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
3437501
3437575
+
Cys
GCA
[Ensembl]
¡û
>C121011825
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2127226
2127152
-
Cys
GCA
[Ensembl]
¡û
>W1610576103
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
344719
344645
-
Cys
GCA
[ENA]
¡û
>W1710534877
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
4703749
4703675
-
Cys
GCA
[ENA]
¡û
>W1710539038
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
560414
560340
-
Cys
GCA
[ENA]
¡û
>W1710575752
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
3971059
3971133
+
Cys
GCA
[ENA]
¡û
>W1710694367
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
344719
344645
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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