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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CCT
HIT:
47 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238534 (1 seq.)
>W143016608
JMFG01000008
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
81683
81605
-
Arg
CCT
[ENA]
¡û
Identical group No.256128 (2 seq.)
>W1910697281
MEKM01000100
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
5606
5681
+
Arg
CCT
[ENA]
¡û
>W1910697331
MEKO01000111
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
173
247
+
Arg
CCT
[ENA]
¡û
Identical group No.266511 (1 seq.)
>W1711391114
MEKI01000003
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
2851
2774
-
Arg
CCT
[ENA]
¡û
Identical group No.277158 (4 seq.)
>W1711573445
MNDE01000051
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
14631
14555
-
Arg
CCT
[ENA]
¡û
>W1711573889
MNEA01000165
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
3487
3411
-
Arg
CCT
[ENA]
¡û
>W1711574701
MNFX01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
8818
8742
-
Arg
CCT
[ENA]
¡û
>W1711575678
MNJF01000117
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
114
190
+
Arg
CCT
[ENA]
¡û
Identical group No.287459 (8 seq.)
>W1710892315
LNDP01000023
Acidobacteriota
Acidobacteria bacterium Ga0074141 [LNDP]
460871
460795
-
Arg
CCT
[ENA]
¡û
>WENV181166267
OEIU01000023
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
63993
63917
-
Arg
CCT
[ENA]
¢þ
>WENV170649341
JRYC01001529
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
3393
3317
-
Arg
CCT
[ENA]
¢þ
>WENV170649908
JRYD01000380
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
41694
41618
-
Arg
CCT
[ENA]
¢þ
>WENV170651125
JRYF01001083
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
102352
102428
+
Arg
CCT
[ENA]
¢þ
>WENV170653050
JRYI01001436
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
51236
51312
+
Arg
CCT
[ENA]
¢þ
>WENV170708833
LNFM01000002
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
501061
501137
+
Arg
CCT
[ENA]
¢þ
>W1610752581
LNDP01000023
Acidobacteriota
Acidobacteria bacterium Ga0074141 [LNDP]
460871
460795
-
Arg
CCT
[ENA]
¡û
Identical group No.299055 (1 seq.)
>W1810047094
OMOD01000127
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
19621
19545
-
Arg
CCT
[ENA]
¡û
Identical group No.299357 (3 seq.)
>WENV181191420
OEPS010079973
[OEPS] soil metagenome; soil
546
470
-
Arg
CCT
[ENA]
¢þ
>W141564042
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
2351714
2351790
+
Arg
CCT
[ENA]
¡û
>W1810587134
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
1504206
1504130
-
Arg
CCT
[ENA]
¡û
Identical group No.303306 (3 seq.)
>W1710893025
LNEI01000018
Acidobacteriota
Acidobacteria bacterium Ga0077534 [LNEI]
415325
415249
-
Arg
CCT
[ENA]
¡û
>WENV170708917
LNFM01000028
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
236415
236491
+
Arg
CCT
[ENA]
¢þ
>W1610753291
LNEI01000018
Acidobacteriota
Acidobacteria bacterium Ga0077534 [LNEI]
415325
415249
-
Arg
CCT
[ENA]
¡û
Identical group No.303474 (3 seq.)
>W1710892189
LNDN01000010
Acidobacteriota
Acidobacteria bacterium Ga0077522 [LNDN]
15965
15889
-
Arg
CCT
[ENA]
¡û
>WENV170710598
LNFM01002134
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
36967
37043
+
Arg
CCT
[ENA]
¢þ
>W1610752455
LNDN01000010
Acidobacteriota
Acidobacteria bacterium Ga0077522 [LNDN]
15965
15889
-
Arg
CCT
[ENA]
¡û
Identical group No.303652 (3 seq.)
>W1710893875
LNFE01000187
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
40111
40187
+
Arg
CCT
[ENA]
¡û
>WENV170712620
LNFM01015568
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5172
5248
+
Arg
CCT
[ENA]
¢þ
>W1610754141
LNFE01000187
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
40111
40187
+
Arg
CCT
[ENA]
¡û
Identical group No.310137 (2 seq.)
>WENV180692143
OCZS010375346
[OCZS] soil metagenome; soil
349
273
-
Arg
CCT
[ENA]
¢þ
>C161083736
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
4455126
4455050
-
Arg
CCT
-
¡û
Identical group No.311458 (7 seq.)
>WENV180247851
OBEQ010061884
[OBEQ] groundwater metagenome; groundwater
1713
1637
-
Arg
CCT
[ENA]
¢þ
>WENV181155637
OEID01305404
[OEID] soil metagenome; soil
162
86
-
Arg
CCT
[ENA]
¢þ
>WENV181163916
OEIQ01349884
[OEIQ] soil metagenome; soil
147
71
-
Arg
CCT
[ENA]
¢þ
>WENV181186086
OEMN01000026
[OEMN] metagenome; 1998
1816
1892
+
Arg
CCT
[ENA]
¢þ
>W1910697492
MEKU01000001
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
44431
44355
-
Arg
CCT
[ENA]
¡û
>W1910697590
MEKW01000032
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18 [MEKW]
9865
9789
-
Arg
CCT
[ENA]
¡û
>W1910697912
MELF01000026
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MELF]
9903
9827
-
Arg
CCT
[ENA]
¡û
Identical group No.320933 (3 seq.)
>W131179137
ARMD01000016
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
16309
16233
-
Arg
CCT
[ENA]
¡û
>W1610576074
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
407484
407560
+
Arg
CCT
[ENA]
¡û
>W1710694338
LAIJ01000001
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
407484
407560
+
Arg
CCT
[ENA]
¡û
Identical group No.336562 (2 seq.)
>WENV183680196
ORMF010149371
[ORMF] groundwater metagenome; groundwater
34785
34709
-
Arg
CCT
[ENA]
¢þ
>W1910697631
MEKX01000051
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
24218
24294
+
Arg
CCT
[ENA]
¡û
Identical group No.340751 (1 seq.)
>W131221836
AUAU01000015
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
12815
12739
-
Arg
CCT
[ENA]
¡û
Identical group No.348112 (2 seq.)
>W1910697576
MEKV01000123
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
16237
16163
-
Arg
CCT
[ENA]
¡û
>W1910697791
MELC01000039
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
16271
16197
-
Arg
CCT
[ENA]
¡û
Identical group No.362058 (3 seq.)
>W1711574618
MNFT01000032
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
10426
10502
+
Arg
CCT
[ENA]
¡û
>W1711575202
MNHS01000027
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
179
255
+
Arg
CCT
[ENA]
¡û
>W1711576086
MNKK01000057
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
14676
14752
+
Arg
CCT
[ENA]
¡û
Identical group No.364285 (1 seq.)
>W131179235
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1171327
1171403
+
Arg
CCT
[ENA]
¡û
Identical group No.364288 (2 seq.)
>W131179246
ARMF01000008
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
516304
516380
+
Arg
CCT
[ENA]
¡û
>WENV183679770
ORMF010102331
[ORMF] groundwater metagenome; groundwater
4726
4650
-
Arg
CCT
[ENA]
¢þ
Identical group No.371272 (1 seq.)
>W1910697338
MEKP01000086
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
4879
4803
-
Arg
CCT
[ENA]
¡û
Identical group No.373251 (2 seq.)
>W1711574649
MNFV01000122
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
1324
1400
+
Arg
CCT
[ENA]
¡û
>W1711575253
MNHV01000043
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
352
428
+
Arg
CCT
[ENA]
¡û
Identical group No.374233 (1 seq.)
>C000188
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
2275787
2275711
-
Arg
CCT
[Ensembl]
¡û
Identical group No.376371 (5 seq.)
>C024944
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
19763
19687
-
Arg
CCT
[Ensembl]
¡û
>WENV181155517
OEID01216541
[OEID] soil metagenome; soil
135
59
-
Arg
CCT
[ENA]
¢þ
>WENV170006438
AMWB02023553
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
333
409
+
Arg
CCT
[ENA]
¢þ
>WENV170564559
CZKS01000036
[CZKS] soil metagenome genome assembly CiPEHR-AK-2010-FBin.18, contig:; soil
12014
11938
-
Arg
CCT
[ENA]
¢þ
>W09102618
AAIA01000051
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
41937
42013
+
Arg
CCT
[ENA]
¡û
Identical group No.380289 (1 seq.)
>W1910697652
MEKY01000026
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1499
1423
-
Arg
CCT
[ENA]
¡û
Identical group No.388771 (1 seq.)
>W1910697710
MEKZ01000192
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
6615
6691
+
Arg
CCT
[ENA]
¡û
Identical group No.393137 (1 seq.)
>C09100243
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
669948
669872
-
Arg
CCT
[Ensembl]
¡û
Identical group No.406719 (1 seq.)
>W1911748664
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
15443
15367
-
Arg
CCT
[ENA]
¡û
Identical group No.406735 (1 seq.)
>W1810047228
OMOG01000223
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
924
848
-
Arg
CCT
[ENA]
¡û
Identical group No.406922 (3 seq.)
>C181193309
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
5392624
5392700
+
Arg
CCT
-
¡û
>W1810915027
QVQT01000001
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
235260
235184
-
Arg
CCT
[ENA]
¡û
>W1511591143
LBHJ01000020
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
546729
546653
-
Arg
CCT
[ENA]
¡û
Identical group No.408988 (1 seq.)
>W141564269
JIAQ01000001
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
69501
69577
+
Arg
CCT
[ENA]
¡û
Identical group No.415679 (1 seq.)
>C161037457
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
767822
767898
+
Arg
CCT
-
¡û
Identical group No.415806 (2 seq.)
>W1630003661
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
73035
72959
-
Arg
CCT
[ENA]
¡û
>W1730003038
CBXV010000005
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
73035
72959
-
Arg
CCT
[ENA]
¡û
Identical group No.416381 (2 seq.)
>W1711575672
MNJF01000014
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_57_11 [MNJF]
1057
1133
+
Arg
CCT
[ENA]
¡û
>WENV180266628
OBEQ011772955
[OBEQ] groundwater metagenome; groundwater
6769
6845
+
Arg
CCT
[ENA]
¢þ
Identical group No.429848 (1 seq.)
>W1711573423
MNDC01000187
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
186
110
-
Arg
CCT
[ENA]
¡û
Identical group No.440537 (1 seq.)
>W1711574999
MNGW01000026
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
7008
7084
+
Arg
CCT
[ENA]
¡û
Identical group No.446630 (1 seq.)
>W1711384755
MEDJ01000001
Acidobacteriota
Acidobacteria bacterium SCN 69-37 [MEDJ]
64719
64795
+
Arg
CCT
[ENA]
¡û
Identical group No.446752 (1 seq.)
>W1711574667
MNFW01000094
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
12857
12933
+
Arg
CCT
[ENA]
¡û
Identical group No.446753 (1 seq.)
>W1711574686
MNFW01000316
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
14383
14459
+
Arg
CCT
[ENA]
¡û
Identical group No.446756 (1 seq.)
>W1711575239
MNHT01000111
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
11144
11068
-
Arg
CCT
[ENA]
¡û
Identical group No.494602 (12 seq.)
>WENV180257454
OBEQ010911039
[OBEQ] groundwater metagenome; groundwater
465
390
-
Arg
CCT
[ENA]
¢þ
>WENV180258245
OBEQ010988916
[OBEQ] groundwater metagenome; groundwater
11206
11131
-
Arg
CCT
[ENA]
¢þ
>WENV180271067
OBEQ012232939
[OBEQ] groundwater metagenome; groundwater
241
316
+
Arg
CCT
[ENA]
¢þ
>WENV180272145
OBEQ012350861
[OBEQ] groundwater metagenome; groundwater
4
79
+
Arg
CCT
[ENA]
¢þ
>WENV180692765
OCZS010747910
[OCZS] soil metagenome; soil
165
90
-
Arg
CCT
[ENA]
¢þ
>WENV181155157
OEID01009392
[OEID] soil metagenome; soil
375
300
-
Arg
CCT
[ENA]
¢þ
>WENV183671107
ORJL011026937
[ORJL] groundwater metagenome; groundwater
22228
22303
+
Arg
CCT
[ENA]
¢þ
>WENV183681511
ORMF010318372
[ORMF] groundwater metagenome; groundwater
381
456
+
Arg
CCT
[ENA]
¢þ
>WENV183695216
ORMF012353560
[ORMF] groundwater metagenome; groundwater
6201
6276
+
Arg
CCT
[ENA]
¢þ
>WENV183696016
ORMF012486900
[ORMF] groundwater metagenome; groundwater
456
381
-
Arg
CCT
[ENA]
¢þ
>WENV170648681
JRHI01001377
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
6779
6704
-
Arg
CCT
[ENA]
¢þ
>W1910697447
MEKS01000051
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
16650
16575
-
Arg
CCT
[ENA]
¡û
Identical group No.564643 (2 seq.)
>W1711575914
MNJR01000118
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
34003
33929
-
Arg
CCT
[ENA]
¡û
>WENV170956690
MJUP01137082
[MJUP] soil metagenome; viral particles from soil sample MGM
520
592
+
Arg
CCT
[ENA]
¢þ
Identical group No.572506 (1 seq.)
>W1910697674
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2210
2285
+
Arg
CCT
[ENA]
¡û
Identical group No.585433 (5 seq.)
>W1710885886
LMXM01000007
Acidobacteriota
Chloracidobacterium thermophilum [LMXM]
96332
96407
+
Arg
CCT
[ENA]
¡û
>W1710888845
LNAA01000004
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
194683
194608
-
Arg
CCT
[ENA]
¡û
>C11106448
CP002515
Acidobacteriota
Chloracidobacterium thermophilum B [CP002514, CP002515]
545034
545109
+
Arg
CCT
[Ensembl]
¡û
>W1610747812
LMXM01000007
Acidobacteriota
Chloracidobacterium thermophilum [LMXM]
96332
96407
+
Arg
CCT
[ENA]
¡û
>W1610749223
LNAA01000004
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
194683
194608
-
Arg
CCT
[ENA]
¡û
Identical group No.587016 (1 seq.)
>W121017799
AGSB01000066
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
16350
16425
+
Arg
CCT
[ENA]
¡û
Identical group No.611700 (1 seq.)
>W1910697491
MEKT01000237
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
14444
14519
+
Arg
CCT
[ENA]
¡û
Identical group No.648701 (1 seq.)
>W141730247
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1687445
1687520
+
Arg
CCT
[ENA]
¡û
Identical group No.669714 (3 seq.)
>WENV170564761
CZKY01000095
[CZKY] soil metagenome isolate CiPEHR-AK-2010_C2 genome assembly, contig:; soil
5905
5979
+
Arg
CCT
[ENA]
¢þ
>WENV170564812
CZLA01000137
[CZLA] soil metagenome genome assembly CiPEHR-AK-2010-FBin.22, contig:; soil
5696
5770
+
Arg
CCT
[ENA]
¢þ
>W1810047082
OMOD01000080
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
581
507
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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