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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = CTG
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.602421 (1 seq.)
>W1810047219
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27675
27750
+
Gln
CTG
[ENA]
¡û
Identical group No.613443 (1 seq.)
>W1711575882
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
132927
133001
+
Gln
CTG
[ENA]
¡û
Identical group No.735120 (1 seq.)
>W121017807
AGSB01000067
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
347213
347139
-
Gln
CTG
[ENA]
¡û
Identical group No.751864 (2 seq.)
>W1610083332
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
466182
466256
+
Gln
CTG
[ENA]
¡û
>W1710088349
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
466182
466256
+
Gln
CTG
[ENA]
¡û
Identical group No.781167 (4 seq.)
>W1711573427
MNDD01000045
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_7 [MNDD]
14925
14852
-
Gln
CTG
[ENA]
¡û
>W1711573465
MNDE01000154
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
16054
16127
+
Gln
CTG
[ENA]
¡û
>W1711573885
MNEA01000148
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
8864
8937
+
Gln
CTG
[ENA]
¡û
>W1711574697
MNFX01000048
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_57_6 [MNFX]
3038
2965
-
Gln
CTG
[ENA]
¡û
Identical group No.788628 (4 seq.)
>C121011806
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2641227
2641300
+
Gln
CTG
[Ensembl]
¡û
>C121011809
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
3101747
3101820
+
Gln
CTG
[Ensembl]
¡û
>W1710534852
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
544736
544809
+
Gln
CTG
[ENA]
¡û
>W1710539036
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
1115068
1114995
-
Gln
CTG
[ENA]
¡û
Identical group No.794018 (2 seq.)
>W1610576110
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
410534
410607
+
Gln
CTG
[ENA]
¡û
>W1710694374
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
410534
410607
+
Gln
CTG
[ENA]
¡û
Identical group No.794974 (1 seq.)
>W131216820
ATWD01000002
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
984859
984786
-
Gln
CTG
[ENA]
¡û
Identical group No.799581 (2 seq.)
>W1711574180
MNEX01000159
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_65_14 [MNEX]
6606
6679
+
Gln
CTG
[ENA]
¡û
>W1910697460
MEKT01000034
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
2065
2138
+
Gln
CTG
[ENA]
¡û
Identical group No.806507 (1 seq.)
>W1711575208
MNHS01000062
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
14111
14184
+
Gln
CTG
[ENA]
¡û
Identical group No.810069 (2 seq.)
>C11123027
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
1325935
1325862
-
Gln
CTG
[Ensembl]
¡û
>W11137299
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
1394937
1394864
-
Gln
CTG
[ENA]
¡û
Identical group No.812418 (1 seq.)
>W1910697659
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
352
425
+
Gln
CTG
[ENA]
¡û
Identical group No.812421 (2 seq.)
>W1910697415
MEKS01000002
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15 [MEKS]
51426
51499
+
Gln
CTG
[ENA]
¡û
>W1910697741
MELA01000082
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11 [MELA]
45263
45336
+
Gln
CTG
[ENA]
¡û
Identical group No.813400 (2 seq.)
>C024897
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
1209504
1209577
+
Gln
CTG
[Ensembl]
¡û
>W09102610
AAIA01000029
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
34898
34971
+
Gln
CTG
[ENA]
¡û
Identical group No.816408 (2 seq.)
>W131179123
ARMD01000012
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
85736
85663
-
Gln
CTG
[ENA]
¡û
>C09100227
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
4101820
4101747
-
Gln
CTG
[Ensembl]
¡û
Identical group No.816588 (1 seq.)
>W1511432687
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
6496
6423
-
Gln
CTG
[ENA]
¡û
Identical group No.820787 (1 seq.)
>W1810047002
OKRF01000047
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
30332
30405
+
Gln
CTG
[ENA]
¡û
Identical group No.820829 (2 seq.)
>W1810915031
QVQT01000002
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
590019
589946
-
Gln
CTG
[ENA]
¡û
>W1511591110
LBHJ01000003
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
166795
166868
+
Gln
CTG
[ENA]
¡û
Identical group No.821356 (1 seq.)
>W141564272
JIAQ01000003
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
175987
175914
-
Gln
CTG
[ENA]
¡û
Identical group No.824136 (1 seq.)
>C161037462
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1742321
1742394
+
Gln
CTG
-
¡û
Identical group No.824308 (1 seq.)
>W1711575877
MNJR01000026
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
240455
240528
+
Gln
CTG
[ENA]
¡û
Identical group No.828102 (1 seq.)
>C181193291
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
931631
931704
+
Gln
CTG
-
¡û
Identical group No.828501 (1 seq.)
>W1711391144
MEKI01000142
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
36716
36789
+
Gln
CTG
[ENA]
¡û
Identical group No.835654 (1 seq.)
>W1711502590
MKSV01000007
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
1416263
1416190
-
Gln
CTG
[ENA]
¡û
Identical group No.835835 (1 seq.)
>W141730241
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1086100
1086173
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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