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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GAG
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102083 (1 seq.)
>W1711391179
MEKJ01000300
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
6257
6344
+
Leu
GAG
[ENA]
¡û
Identical group No.129321 (2 seq.)
>W1910697548
MEKV01000058
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
39341
39427
+
Leu
GAG
[ENA]
¡û
>W1910697776
MELC01000010
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
5127
5213
+
Leu
GAG
[ENA]
¡û
Identical group No.137212 (1 seq.)
>W1711576114
MNKM01000157
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_65_9 [MNKM]
5752
5666
-
Leu
GAG
[ENA]
¡û
Identical group No.144857 (1 seq.)
>W1910697484
MEKT01000194
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
60279
60193
-
Leu
GAG
[ENA]
¡û
Identical group No.145069 (1 seq.)
>C161037460
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
1324056
1324142
+
Leu
GAG
-
¡û
Identical group No.152296 (1 seq.)
>W1910697883
MELE01000124
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
18700
18786
+
Leu
GAG
[ENA]
¡û
Identical group No.157365 (1 seq.)
>W1810587130
QFFY01000001
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
397697
397782
+
Leu
GAG
[ENA]
¡û
Identical group No.162589 (1 seq.)
>W1910697640
MEKX01000114
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
33657
33742
+
Leu
GAG
[ENA]
¡û
Identical group No.170924 (1 seq.)
>W121017812
AGSB01000069
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
89151
89236
+
Leu
GAG
[ENA]
¡û
Identical group No.178336 (2 seq.)
>W1711575232
MNHT01000043
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
9641
9556
-
Leu
GAG
[ENA]
¡û
>W1711576097
MNKK01000125
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
645
730
+
Leu
GAG
[ENA]
¡û
Identical group No.186412 (2 seq.)
>C121011823
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2259707
2259623
-
Leu
GAG
[Ensembl]
¡û
>W1710534895
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
69379
69295
-
Leu
GAG
[ENA]
¡û
Identical group No.191060 (3 seq.)
>W131216825
ATWD01000002
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
175283
175199
-
Leu
GAG
[ENA]
¡û
>W141557314
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
522535
522451
-
Leu
GAG
[ENA]
¡û
>W141817041
JQKI01000024
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
17078
17162
+
Leu
GAG
[ENA]
¡û
Identical group No.193478 (1 seq.)
>W1910697373
MEKQ01000154
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20 [MEKQ]
2373
2457
+
Leu
GAG
[ENA]
¡û
Identical group No.199532 (1 seq.)
>W131179220
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
933075
933159
+
Leu
GAG
[ENA]
¡û
Identical group No.200923 (1 seq.)
>W1910697327
MEKO01000085
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
646
730
+
Leu
GAG
[ENA]
¡û
Identical group No.201538 (2 seq.)
>C000187
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
2284838
2284754
-
Leu
GAG
[Ensembl]
¡û
>W141564030
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
999888
999972
+
Leu
GAG
[ENA]
¡û
Identical group No.202834 (1 seq.)
>W1910697686
MEKY01000103
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
27332
27416
+
Leu
GAG
[ENA]
¡û
Identical group No.205274 (1 seq.)
>W1710539034
FNVA01000001
Acidobacteriota
Bryocella elongata [FNVA]
1124006
1124090
+
Leu
GAG
[ENA]
¡û
Identical group No.205584 (1 seq.)
>W141696010
JMFG01000002
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
141675
141591
-
Leu
GAG
[ENA]
¡û
Identical group No.205625 (1 seq.)
>W1511432685
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
468835
468751
-
Leu
GAG
[ENA]
¡û
Identical group No.208784 (1 seq.)
>W141564282
JIAQ01000009
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
234444
234360
-
Leu
GAG
[ENA]
¡û
Identical group No.210213 (2 seq.)
>W1610083320
CBXV010000006
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
94591
94675
+
Leu
GAG
[ENA]
¡û
>W1710088337
CBXV010000006
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
94591
94675
+
Leu
GAG
[ENA]
¡û
Identical group No.210324 (1 seq.)
>W1711575875
MNJR01000023
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
37183
37100
-
Leu
GAG
[ENA]
¡û
Identical group No.213311 (1 seq.)
>W1711391137
MEKI01000134
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
334
250
-
Leu
GAG
[ENA]
¡û
Identical group No.216793 (1 seq.)
>W1810046936
OKRB01000078
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
76234
76318
+
Leu
GAG
[ENA]
¡û
Identical group No.217120 (1 seq.)
>W141730269
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
1023722
1023638
-
Leu
GAG
[ENA]
¡û
Identical group No.225807 (1 seq.)
>W1911748643
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
3669314
3669231
-
Leu
GAG
[ENA]
¡û
Identical group No.225822 (1 seq.)
>W1810915032
QVQT01000002
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
360432
360349
-
Leu
GAG
[ENA]
¡û
Identical group No.227172 (1 seq.)
>C181193286
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
26737
26820
+
Leu
GAG
-
¡û
Identical group No.228289 (1 seq.)
>W1511591109
LBHJ01000003
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
79169
79252
+
Leu
GAG
[ENA]
¡û
Identical group No.230983 (1 seq.)
>W1930012635
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
3190
3272
+
Leu
GAG
[ENA]
¡û
Identical group No.262218 (1 seq.)
>W1810047212
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26082
26159
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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