This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GAT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29977 (2 seq.)
>W1710827104
LLEU01000043
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
4429
4339
-
Ile
GAT
[ENA]
¡û
>W1610690381
LLEU01000043
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
4429
4339
-
Ile
GAT
[ENA]
¡û
Identical group No.264177 (1 seq.)
>W1711575922
MNJR01000142
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
123892
123815
-
Ile
GAT
[ENA]
¡û
Identical group No.324002 (6 seq.)
>W10119490
ADVX01000009
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
110159
110235
+
Ile
GAT
[ENA]
¡û
>C11123015
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3872236
3872160
-
Ile
GAT
[Ensembl]
¡û
>W11125756
ADVX01000009
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
110159
110235
+
Ile
GAT
[ENA]
¡û
>W11137287
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3928519
3928443
-
Ile
GAT
[ENA]
¡û
>C121006490
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
693023
693099
+
Ile
GAT
[Ensembl]
¡û
>W1710539073
FNVA01000015
Acidobacteriota
Bryocella elongata [FNVA]
2596
2672
+
Ile
GAT
[ENA]
¡û
Identical group No.371268 (2 seq.)
>W1910697289
MEKM01000162
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
4528
4452
-
Ile
GAT
[ENA]
¡û
>W1910697320
MEKO01000021
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
8917
8841
-
Ile
GAT
[ENA]
¡û
Identical group No.380293 (1 seq.)
>W1910697676
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2430
2506
+
Ile
GAT
[ENA]
¡û
Identical group No.393513 (1 seq.)
>W141696029
JMFG01000020
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
87288
87364
+
Ile
GAT
[ENA]
¡û
Identical group No.393691 (1 seq.)
>W1511432673
JUGR01000001
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
3429382
3429458
+
Ile
GAT
[ENA]
¡û
Identical group No.406737 (1 seq.)
>W1810047251
OMOG01000730
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
412
488
+
Ile
GAT
[ENA]
¡û
Identical group No.415891 (2 seq.)
>W1610083349
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
61136
61060
-
Ile
GAT
[ENA]
¡û
>W1710088366
CBXV010000008
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
61136
61060
-
Ile
GAT
[ENA]
¡û
Identical group No.447374 (2 seq.)
>W141730272
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
851819
851743
-
Ile
GAT
[ENA]
¡û
>W141730278
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
258516
258592
+
Ile
GAT
[ENA]
¡û
Identical group No.602674 (1 seq.)
>W1830000692
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27268
27343
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK