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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GCA
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239421 (1 seq.)
>W1711575888
MNJR01000027
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
134202
134280
+
Cys
GCA
[ENA]
¡û
Identical group No.350480 (2 seq.)
>W1711573432
MNDD01000166
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_7 [MNDD]
2237
2161
-
Cys
GCA
[ENA]
¡û
>W1711573870
MNEA01000046
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
24504
24580
+
Cys
GCA
[ENA]
¡û
Identical group No.382266 (1 seq.)
>W1711573878
MNEA01000118
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_2_57_6 [MNEA]
1567
1643
+
Cys
GCA
[ENA]
¡û
Identical group No.406730 (1 seq.)
>W1810047216
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
26418
26494
+
Cys
GCA
[ENA]
¡û
Identical group No.423419 (1 seq.)
>W1711573471
MNDF01000077
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_56_17 [MNDF]
1324
1248
-
Cys
GCA
[ENA]
¡û
Identical group No.483015 (1 seq.)
>W1810587152
QFFY01000003
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
677375
677300
-
Cys
GCA
[ENA]
¡û
Identical group No.483017 (1 seq.)
>W1810587158
QFFY01000004
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
345983
345908
-
Cys
GCA
[ENA]
¡û
Identical group No.483018 (1 seq.)
>W1810587166
QFFY01000006
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
309028
308953
-
Cys
GCA
[ENA]
¡û
Identical group No.486227 (2 seq.)
>C121011790
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
237661
237736
+
Cys
GCA
[Ensembl]
¡û
>W1710534884
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
2386982
2386907
-
Cys
GCA
[ENA]
¡û
Identical group No.486962 (1 seq.)
>W1711573484
MNDG01000019
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_55_8 [MNDG]
1533
1458
-
Cys
GCA
[ENA]
¡û
Identical group No.506756 (2 seq.)
>W1610576081
LAIJ01000005
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
353
428
+
Cys
GCA
[ENA]
¡û
>W1710694345
LAIJ01000005
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
353
428
+
Cys
GCA
[ENA]
¡û
Identical group No.510205 (3 seq.)
>W10119493
ADVX01000011
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
152453
152528
+
Cys
GCA
[ENA]
¡û
>W11125759
ADVX01000011
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
152453
152528
+
Cys
GCA
[ENA]
¡û
>C121006511
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
5008328
5008403
+
Cys
GCA
[Ensembl]
¡û
Identical group No.510833 (2 seq.)
>W131216815
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
816126
816051
-
Cys
GCA
[ENA]
¡û
>W141557290
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
4102598
4102673
+
Cys
GCA
[ENA]
¡û
Identical group No.562048 (1 seq.)
>W1910697341
MEKP01000104
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 [MEKP]
2916
2841
-
Cys
GCA
[ENA]
¡û
Identical group No.564883 (2 seq.)
>C11122998
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
3218883
3218958
+
Cys
GCA
[Ensembl]
¡û
>W11137270
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
3275166
3275241
+
Cys
GCA
[ENA]
¡û
Identical group No.572502 (1 seq.)
>W1910697658
MEKY01000046
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
2602
2527
-
Cys
GCA
[ENA]
¡û
Identical group No.597732 (1 seq.)
>W141817053
JQKI01000057
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
10897
10972
+
Cys
GCA
[ENA]
¡û
Identical group No.621152 (2 seq.)
>W1711386863
MEFW01000068
Acidobacteriota
Granulicella sp. SCN 62-9 [MEFW]
8656
8731
+
Cys
GCA
[ENA]
¡û
>W1711502608
MKSV01000010
Acidobacteriota
Acidobacteriales bacterium 59-55 [MKSV]
226459
226384
-
Cys
GCA
[ENA]
¡û
Identical group No.696622 (1 seq.)
>W1910697619
MEKX01000007
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
11809
11735
-
Cys
GCA
[ENA]
¡û
Identical group No.713613 (4 seq.)
>W1711574621
MNFT01000072
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_69_4 [MNFT]
5315
5241
-
Cys
GCA
[ENA]
¡û
>W1711575226
MNHS01000207
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_5 [MNHS]
6927
6853
-
Cys
GCA
[ENA]
¡û
>W1711575229
MNHT01000011
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_68_10 [MNHT]
4409
4483
+
Cys
GCA
[ENA]
¡û
>W1711576100
MNKK01000135
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_68_7 [MNKK]
5914
5988
+
Cys
GCA
[ENA]
¡û
Identical group No.714954 (1 seq.)
>W131179217
ARMF01000004
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
423587
423513
-
Cys
GCA
[ENA]
¡û
Identical group No.714955 (1 seq.)
>W131179222
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1164409
1164483
+
Cys
GCA
[ENA]
¡û
Identical group No.719923 (1 seq.)
>W1810047020
OKRG01000001
Acidobacteriota
Acidobacteriia bacterium SbA2 SbA2 Peat soil MAG SbA2 [OKRG]
40693
40767
+
Cys
GCA
[ENA]
¡û
Identical group No.728437 (2 seq.)
>C024906
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
2200500
2200574
+
Cys
GCA
[Ensembl]
¡û
>W09102627
AAIA01000074
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
32286
32360
+
Cys
GCA
[ENA]
¡û
Identical group No.735121 (1 seq.)
>W121017810
AGSB01000068
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
319718
319792
+
Cys
GCA
[ENA]
¡û
Identical group No.735315 (1 seq.)
>W141696034
JMFG01000020
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
241735
241661
-
Cys
GCA
[ENA]
¡û
Identical group No.744616 (1 seq.)
>W1910697400
MEKR01000137
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
3202
3276
+
Cys
GCA
[ENA]
¡û
Identical group No.744709 (1 seq.)
>W1810047253
OMOG01000741
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
549
623
+
Cys
GCA
[ENA]
¡û
Identical group No.751771 (1 seq.)
>C161037471
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
5775321
5775395
+
Cys
GCA
-
¡û
Identical group No.761644 (1 seq.)
>W1711391112
MEKI01000001
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
7947
7873
-
Cys
GCA
[ENA]
¡û
Identical group No.776399 (1 seq.)
>W131179125
ARMD01000013
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
56977
57051
+
Cys
GCA
[ENA]
¡û
Identical group No.781164 (1 seq.)
>W1711573438
MNDE01000006
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
270
197
-
Cys
GCA
[ENA]
¡û
Identical group No.828545 (1 seq.)
>W1711573417
MNDC01000141
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
4394
4321
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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