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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GGT
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399556 (1 seq.)
>W1711391187
MEKK01000057
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
1290
1216
-
Thr
GGT
[ENA]
¡û
Identical group No.406731 (1 seq.)
>W1810047217
OMOG01000102
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
27183
27259
+
Thr
GGT
[ENA]
¡û
Identical group No.506760 (2 seq.)
>W1610576108
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
764
689
-
Thr
GGT
[ENA]
¡û
>W1710694372
LAIJ01000009
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
764
689
-
Thr
GGT
[ENA]
¡û
Identical group No.554514 (1 seq.)
>W131179262
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1198905
1198980
+
Thr
GGT
[ENA]
¡û
Identical group No.562043 (3 seq.)
>W1910697275
MEKM01000040
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_01_FULL_67_28 [MEKM]
212
137
-
Thr
GGT
[ENA]
¡û
>W1910697308
MEKN01000274
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_02_FULL_67_57 [MEKN]
215
140
-
Thr
GGT
[ENA]
¡û
>W1910697316
MEKO01000004
Acidobacteriota
Acidobacteria bacterium RIFCSPHIGHO2_12_FULL_67_30 [MEKO]
216
141
-
Thr
GGT
[ENA]
¡û
Identical group No.564324 (3 seq.)
>W1711574211
MNEY01000138
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_56_16 [MNEY]
8107
8182
+
Thr
GGT
[ENA]
¡û
>W1711574980
MNGU01000220
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
7879
7954
+
Thr
GGT
[ENA]
¡û
>W1711576153
MNKP01000109
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_55_15 [MNKP]
306
231
-
Thr
GGT
[ENA]
¡û
Identical group No.572504 (1 seq.)
>W1910697669
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1632
1707
+
Thr
GGT
[ENA]
¡û
Identical group No.574569 (1 seq.)
>W1711391176
MEKJ01000271
Acidobacteriota
Acidobacteria bacterium RBG_16_64_8 [MEKJ]
2646
2721
+
Thr
GGT
[ENA]
¡û
Identical group No.576086 (2 seq.)
>C024919
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
7940701
7940776
+
Thr
GGT
[Ensembl]
¡û
>W09102629
AAIA01000075
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
2387
2462
+
Thr
GGT
[ENA]
¡û
Identical group No.587406 (1 seq.)
>W141696048
JMFG01000037
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
173
98
-
Thr
GGT
[ENA]
¡û
Identical group No.602409 (2 seq.)
>C181193296
CP030840
Acidobacteriota
Acidisarcina polymorpha SBC82 [CP030840]
1525616
1525691
+
Thr
GGT
-
¡û
>W1911748632
QWEV01000005
Acidobacteriota
Acidipila sp. EB88 [QWEV]
2195655
2195730
+
Thr
GGT
[ENA]
¡û
Identical group No.628749 (1 seq.)
>W1711391150
MEKI01000160
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
48236
48311
+
Thr
GGT
[ENA]
¡û
Identical group No.647815 (1 seq.)
>W1711391205
MEKL01000094
Acidobacteriota
Acidobacteria bacterium RBG_16_70_10 [MEKL]
225
150
-
Thr
GGT
[ENA]
¡û
Identical group No.648704 (1 seq.)
>W141730256
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
3043997
3044072
+
Thr
GGT
[ENA]
¡û
Identical group No.673522 (2 seq.)
>C121011831
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
1025308
1025234
-
Thr
GGT
[Ensembl]
¡û
>W1710534855
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
1537641
1537715
+
Thr
GGT
[ENA]
¡û
Identical group No.687841 (8 seq.)
>W131216798
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
4221106
4221180
+
Thr
GGT
[ENA]
¡û
>W141557303
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
1807455
1807381
-
Thr
GGT
[ENA]
¡û
>W141817061
JQKI01000084
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
22491
22565
+
Thr
GGT
[ENA]
¡û
>W10119475
ADVX01000005
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
25071
25145
+
Thr
GGT
[ENA]
¡û
>C11123011
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
4168887
4168813
-
Thr
GGT
[Ensembl]
¡û
>W11125741
ADVX01000005
Acidobacteriota
Granulicella mallensis MP5ACTX8 [ADVX]
25071
25145
+
Thr
GGT
[ENA]
¡û
>W11137283
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
4225170
4225096
-
Thr
GGT
[ENA]
¡û
>C121006494
CP003130
Acidobacteriota
Granulicella mallensis MP5ACTX8 [CP003130]
874511
874585
+
Thr
GGT
[Ensembl]
¡û
Identical group No.734438 (1 seq.)
>W1710539042
FNVA01000002
Acidobacteriota
Bryocella elongata [FNVA]
406234
406308
+
Thr
GGT
[ENA]
¡û
Identical group No.735123 (1 seq.)
>W121017821
AGSB01000070
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
391271
391197
-
Thr
GGT
[ENA]
¡û
Identical group No.735464 (1 seq.)
>W1511432695
JUGR01000004
Acidobacteriota
Terriglobus sp. TAA 43 [JUGR]
1847
1773
-
Thr
GGT
[ENA]
¡û
Identical group No.751863 (2 seq.)
>W1610083327
CBXV010000007
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
338062
338136
+
Thr
GGT
[ENA]
¡û
>W1710088344
CBXV010000007
Acidobacteriota
Pyrinomonas methylaliphatogenes [CBXV]
338062
338136
+
Thr
GGT
[ENA]
¡û
Identical group No.752172 (1 seq.)
>W1711575910
MNJR01000083
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
152
78
-
Thr
GGT
[ENA]
¡û
Identical group No.807084 (1 seq.)
>W131179230
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1167758
1167831
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK