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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidobacteriota
Anticodon = GTC
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261204 (1 seq.)
>W1711391183
MEKK01000057
Acidobacteriota
Acidobacteria bacterium RBG_16_68_9 [MEKK]
5815
5738
-
Asp
GTC
[ENA]
¡û
Identical group No.262219 (1 seq.)
>W1810047230
OMOG01000247
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
36551
36628
+
Asp
GTC
[ENA]
¡û
Identical group No.269455 (2 seq.)
>W1710827087
LLEU01000020
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
80006
79929
-
Asp
GTC
[ENA]
¡û
>W1610690364
LLEU01000020
Acidobacteriota
Acidobacteria bacterium OLB17 [LLEU]
80006
79929
-
Asp
GTC
[ENA]
¡û
Identical group No.299364 (1 seq.)
>W1810587164
QFFY01000006
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
276306
276382
+
Asp
GTC
[ENA]
¡û
Identical group No.302391 (3 seq.)
>C121011805
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2532470
2532546
+
Asp
GTC
[Ensembl]
¡û
>C121011808
CP003379
Acidobacteriota
Terriglobus roseus DSM 18391 [CP003379]
2992990
2993066
+
Asp
GTC
[Ensembl]
¡û
>W1710534851
FNSD01000001
Acidobacteriota
Terriglobus roseus [FNSD]
455492
455568
+
Asp
GTC
[ENA]
¡û
Identical group No.320940 (3 seq.)
>W1610576115
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
421134
421210
+
Asp
GTC
[ENA]
¡û
>W1710575759
FOZL01000001
Acidobacteriota
Granulicella pectinivorans [FOZL]
3926487
3926411
-
Asp
GTC
[ENA]
¡û
>W1710694379
LAIJ01000012
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
421134
421210
+
Asp
GTC
[ENA]
¡û
Identical group No.340587 (1 seq.)
>W131221822
AUAU01000005
Acidobacteriota
Geothrix fermentans DSM 14018 [AUAU]
203536
203612
+
Asp
GTC
[ENA]
¡û
Identical group No.373752 (2 seq.)
>C11123020
CP002467
Acidobacteriota
Terriglobus saanensis SP1PR4 [CP002467]
2871761
2871685
-
Asp
GTC
[Ensembl]
¡û
>W11137292
AEHE01000001
Acidobacteriota
Terriglobus saanensis SP1PR4 [AEHE]
2928044
2927968
-
Asp
GTC
[ENA]
¡û
Identical group No.380803 (1 seq.)
>W1930012632
MEKY01000049
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_59_11 [MEKY]
1225
1301
+
Asp
GTC
[ENA]
¡û
Identical group No.393178 (1 seq.)
>W121017824
AGSB01000070
Acidobacteriota
Holophaga foetida DSM 6591 [AGSB]
197590
197514
-
Asp
GTC
[ENA]
¡û
Identical group No.415681 (1 seq.)
>C161037466
CP011806
Acidobacteriota
Acidobacteria bacterium Mor1 [CP011806]
2728100
2728176
+
Asp
GTC
-
¡û
Identical group No.429193 (1 seq.)
>C161083713
CP015136
Acidobacteriota
Luteitalea pratensis DSM 100886; HEG_-6_39 [CP015136]
5972171
5972247
+
Asp
GTC
-
¡û
Identical group No.429698 (1 seq.)
>W1711391152
MEKI01000162
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
7605
7529
-
Asp
GTC
[ENA]
¡û
Identical group No.447372 (1 seq.)
>W141730239
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
497326
497402
+
Asp
GTC
[ENA]
¡û
Identical group No.671496 (1 seq.)
>W1810047096
OMOD01000129
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
29384
29312
-
Asp
GTC
[ENA]
¡û
Identical group No.714958 (1 seq.)
>W131179234
ARMF01000006
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
1170701
1170775
+
Asp
GTC
[ENA]
¡û
Identical group No.726554 (1 seq.)
>W1810046983
OKRE01000145
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
7138
7210
+
Asp
GTC
[ENA]
¡û
Identical group No.744708 (1 seq.)
>W1810047240
OMOG01000368
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
5842
5916
+
Asp
GTC
[ENA]
¡û
Identical group No.751912 (1 seq.)
>W1730031550
MNJR01000112
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_3_53_8 [MNJR]
9941
10013
+
Asp
GTC
[ENA]
¡û
Identical group No.771726 (1 seq.)
>W1711575009
MNGW01000101
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
11503
11431
-
Asp
GTC
[ENA]
¡û
Identical group No.815199 (2 seq.)
>W1910697393
MEKR01000103
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
1979
1909
-
Asp
GTC
[ENA]
¡û
>W1910697707
MEKZ01000138
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 [MEKZ]
4867
4797
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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