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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274688 (85 seq.)
>W1710783818
LJFZ01000012
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
83091
83167
+
Phe
GAA
[ENA]
¡û
>W1710787571
LJJX01000018
Actinomycetota
Frankia sp. CpI1-P [LJJX]
31707
31781
+
Phe
GAA
[ENA]
¡û
>W1710793226
LJPA01000029
Actinomycetota
Frankia sp. ACN1ag [LJPA]
31701
31775
+
Phe
GAA
[ENA]
¡û
>W1711053923
LRTJ01000076
Actinomycetota
Frankia casuarinae BR [LRTJ]
3685
3609
-
Phe
GAA
[ENA]
¡û
>W1711053969
LRTK01000070
Actinomycetota
Frankia sp. EI5c [LRTK]
2912
2988
+
Phe
GAA
[ENA]
¡û
>W1711317118
MAXA01000169
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
36088
36014
-
Phe
GAA
[ENA]
¡û
>W1711328904
MBLN01000059
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
29139
29063
-
Phe
GAA
[ENA]
¡û
>W1711328940
MBLO01000025
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
96048
95972
-
Phe
GAA
[ENA]
¡û
>W1711329011
MBLP01000070
Actinomycetota
Frankia sp. CgIS1 [MBLP]
105758
105834
+
Phe
GAA
[ENA]
¡û
>W1711491898
MKJY01000300
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
714
638
-
Phe
GAA
[ENA]
¡û
>W1711603533
MOMC01000084
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
26100
26176
+
Phe
GAA
[ENA]
¡û
>W1711603569
MOMD01000029
Actinomycetota
Frankia sp. CcI156 [MOMD]
77019
77095
+
Phe
GAA
[ENA]
¡û
>W1711603618
MOME01000051
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
2910
2834
-
Phe
GAA
[ENA]
¡û
>W1711612450
MOWP01000028
Actinomycetota
Frankia sp. CcI49 [MOWP]
294869
294943
+
Phe
GAA
[ENA]
¡û
>W1711678709
MRUJ01000347
Actinomycetota
Frankia sp. KB5 [MRUJ]
907
983
+
Phe
GAA
[ENA]
¡û
>W1711689398
MSEA01000217
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
1912
1836
-
Phe
GAA
[ENA]
¡û
>W131168036
ARDT01000008
Actinomycetota
Parafrankia discariae BCU110501 [ARDT]
38568
38492
-
Phe
GAA
[ENA]
¡û
>W131170520
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
929808
929884
+
Phe
GAA
[ENA]
¡û
>W131234791
AULB01000019
Actinomycetota
Actinomadura rifamycini DSM 43936 [AULB]
69412
69338
-
Phe
GAA
[ENA]
¡û
>C009346
CT573213
Actinomycetota
Frankia alni ACN14a [CT573213]
178115
178191
+
Phe
GAA
[Ensembl]
¡û
>C009544
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
140109
140185
+
Phe
GAA
[Ensembl]
¡û
>w007098
AAII01000002
Actinomycetota
Frankia sp. EAN1pec [AAII]
122488
122566
+
Phe
GAA
[ENA]
¡û
>WENV180247916
OBEQ010068002
[OBEQ] groundwater metagenome; groundwater
1259
1183
-
Phe
GAA
[ENA]
¢þ
>WENV180262214
OBEQ011366529
[OBEQ] groundwater metagenome; groundwater
10659
10583
-
Phe
GAA
[ENA]
¢þ
>WENV181163693
OEIQ01186719
[OEIQ] soil metagenome; soil
81
5
-
Phe
GAA
[ENA]
¢þ
>W141140033
AWOO02000006
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
221255
221331
+
Phe
GAA
[ENA]
¡û
>W141195295
AYTZ01000013
Actinomycetota
Frankia sp. CcI6 [AYTZ]
119436
119512
+
Phe
GAA
[ENA]
¡û
>C08005082
CP000820
Actinomycetota
Frankia sp. EAN1pec EAN1.pec [CP000820]
8696116
8696042
-
Phe
GAA
[Ensembl]
¡û
>WENV183748541
PPFU01050838
[PPFU] hypolithon metagenome; Antarctic Hypolithon
912
836
-
Phe
GAA
[ENA]
¢þ
>W141403425
JDWE01000005
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
37191
37115
-
Phe
GAA
[ENA]
¡û
>W141427344
JENI01000001
Actinomycetota
Frankia casuarinae Thr [JENI]
3500
3424
-
Phe
GAA
[ENA]
¡û
>C191089084
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
593947
593870
-
Phe
GAA
-
¡û
>W09102703
AAIE01000013
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
5730
5654
-
Phe
GAA
[ENA]
¡û
>W141758068
JNYJ01000017
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
73964
74040
+
Phe
GAA
[ENA]
¡û
>W141760236
JNZX01000537
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
3101
3025
-
Phe
GAA
[ENA]
¡û
>W141768685
JOFJ01000010
Actinomycetota
Spirillospora albida [JOFJ]
92119
92193
+
Phe
GAA
[ENA]
¡û
>W141803598
JPGU01000022
Actinomycetota
Frankia sp. CeD [JPGU]
68209
68285
+
Phe
GAA
[ENA]
¡û
>W141804378
JPHT01000001
Actinomycetota
Frankia sp. Allo2 [JPHT]
3741
3665
-
Phe
GAA
[ENA]
¡û
>W1910546345
FZMO01000301
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
14049
14125
+
Phe
GAA
[ENA]
¡û
>W1910547246
FZNP01000033
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
19439
19514
+
Phe
GAA
[ENA]
¡û
>W1910548692
FZOR01000056
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
2200
2126
-
Phe
GAA
[ENA]
¡û
>W1911504310
OESX01000301
Actinomycetota
Frankia canadensis ARgP5 [OESX]
14049
14125
+
Phe
GAA
[ENA]
¡û
>W1911678994
QHJN01000251
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
252
327
+
Phe
GAA
[ENA]
¡û
>W1810698096
QLYX01000008
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
208269
208195
-
Phe
GAA
[ENA]
¡û
>W1810861253
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
2487913
2487988
+
Phe
GAA
[ENA]
¡û
>W1810913859
QVNQ01000014
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
107970
108045
+
Phe
GAA
[ENA]
¡û
>W10111546
ADDL01000020
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
88792
88718
-
Phe
GAA
[ENA]
¡û
>W10114059
ADGT01000054
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
28900
28974
+
Phe
GAA
[ENA]
¡û
>W10114166
ADGX01000012
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
1886
1962
+
Phe
GAA
[ENA]
¡û
>W1510456335
CPWZ01000042
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
45077
45001
-
Phe
GAA
[ENA]
¡û
>C11109214
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
8597948
8597874
-
Phe
GAA
[Ensembl]
¡û
>C11109392
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
351494
351420
-
Phe
GAA
[Ensembl]
¡û
>W11114473
ADDL01000020
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
88792
88718
-
Phe
GAA
[ENA]
¡û
>W11117395
ADGT01000054
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
28900
28974
+
Phe
GAA
[ENA]
¡û
>W11117502
ADGX01000012
Actinomycetota
Parafrankia sp. EUN1f EUN1f [ADGX]
1886
1962
+
Phe
GAA
[ENA]
¡û
>W1511479842
JWIO01000054
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
2526
2450
-
Phe
GAA
[ENA]
¡û
>W1511524731
JYFN01000017
Actinomycetota
Frankia torreyi CpI1-S [JYFN]
31728
31802
+
Phe
GAA
[ENA]
¡û
>W1511568515
LAJC01000016
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
81620
81544
-
Phe
GAA
[ENA]
¡û
>W1511573813
LANG01000008
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
1118428
1118504
+
Phe
GAA
[ENA]
¡û
>W121010773
AGJN01000045
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
22455
22531
+
Phe
GAA
[ENA]
¡û
>W121069976
AJWA01000079
Actinomycetota
Frankia sp. QA3 [AJWA]
192282
192206
-
Phe
GAA
[ENA]
¡û
>W1610067481
BCQP01000060
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
44588
44662
+
Phe
GAA
[ENA]
¡û
>W1610067548
BCQQ01000205
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
3551
3625
+
Phe
GAA
[ENA]
¡û
>W1610067594
BCQR01000115
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
11241
11317
+
Phe
GAA
[ENA]
¡û
>W1610067654
BCQS01000008
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
5532
5456
-
Phe
GAA
[ENA]
¡û
>W1610067728
BCQT01000020
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
209468
209392
-
Phe
GAA
[ENA]
¡û
>W1610068722
BCRO01000012
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
25907
25833
-
Phe
GAA
[ENA]
¡û
>W1610163571
FAOZ01000004
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
53106
53180
+
Phe
GAA
[ENA]
¡û
>W1610507931
FLUV01000146
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
351
275
-
Phe
GAA
[ENA]
¡û
>W1610597135
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
57335
57259
-
Phe
GAA
[ENA]
¡û
>W1610648326
LJFZ01000012
Actinomycetota
Frankia sp. AvcI1 [LJFZ]
83091
83167
+
Phe
GAA
[ENA]
¡û
>W1610651426
LJJX01000018
Actinomycetota
Frankia sp. CpI1-P [LJJX]
31707
31781
+
Phe
GAA
[ENA]
¡û
>W1610657230
LJPA01000029
Actinomycetota
Frankia sp. ACN1ag [LJPA]
31701
31775
+
Phe
GAA
[ENA]
¡û
>W1610895111
LRTJ01000076
Actinomycetota
Frankia casuarinae BR [LRTJ]
3685
3609
-
Phe
GAA
[ENA]
¡û
>W1610895157
LRTK01000070
Actinomycetota
Frankia sp. EI5c [LRTK]
2912
2988
+
Phe
GAA
[ENA]
¡û
>W1710064854
BCQP01000060
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
44588
44662
+
Phe
GAA
[ENA]
¡û
>W1710064921
BCQQ01000205
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
3551
3625
+
Phe
GAA
[ENA]
¡û
>W1710064967
BCQR01000115
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
11241
11317
+
Phe
GAA
[ENA]
¡û
>W1710065027
BCQS01000008
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
5532
5456
-
Phe
GAA
[ENA]
¡û
>W1710065101
BCQT01000020
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
209468
209392
-
Phe
GAA
[ENA]
¡û
>W1710066095
BCRO01000012
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
25907
25833
-
Phe
GAA
[ENA]
¡û
>W1710165238
FAOZ01000004
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
53106
53180
+
Phe
GAA
[ENA]
¡û
>W1710539640
FNVO01000028
Actinomycetota
Thermomonospora echinospora [FNVO]
27132
27056
-
Phe
GAA
[ENA]
¡û
>W1710570694
FOVH01000024
Actinomycetota
Actinomadura madurae [FOVH]
11257
11181
-
Phe
GAA
[ENA]
¡û
>W1710718294
LFCW01000006
Actinomycetota
Frankia sp. R43 [LFCW]
57335
57259
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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