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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Actinobacteria
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458717 (7 seq.)
>W1711603607
MOME01000026
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
74551
74624
+
Asn
GTT
[ENA]
¡û
>WENV181192482
OEPS010702222
[OEPS] soil metagenome; soil
142
215
+
Asn
GTT
[ENA]
¢þ
>W10114054
ADGT01000042
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
31635
31708
+
Asn
GTT
[ENA]
¡û
>C11109368
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
3950989
3951062
+
Asn
GTT
[Ensembl]
¡û
>W11117390
ADGT01000042
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
31635
31708
+
Asn
GTT
[ENA]
¡û
>W1511479836
JWIO01000040
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
38704
38631
-
Asn
GTT
[ENA]
¡û
>W1610507951
FLUV01002087
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
925
998
+
Asn
GTT
[ENA]
¡û
Identical group No.507350 (18 seq.)
>W1810167469
PJIN01000001
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
722841
722916
+
Asn
GTT
[ENA]
¡û
>W1810167470
PJIN01000001
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
723044
723119
+
Asn
GTT
[ENA]
¡û
>W1810627297
QHLZ01000001
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
149763
149688
-
Asn
GTT
[ENA]
¡û
>W1810627298
QHLZ01000001
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
149561
149488
-
Asn
GTT
[ENA]
¡û
>W1810673911
QJVC01000010
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
26000
25925
-
Asn
GTT
[ENA]
¡û
>W1810673912
QJVC01000010
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
25806
25731
-
Asn
GTT
[ENA]
¡û
>W1810674013
QJVE01000008
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
164767
164692
-
Asn
GTT
[ENA]
¡û
>W1810674014
QJVE01000008
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
164571
164498
-
Asn
GTT
[ENA]
¡û
>C151029491
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
4427814
4427889
+
Asn
GTT
[Ensembl]
¡û
>C151029492
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
4428008
4428083
+
Asn
GTT
[Ensembl]
¡û
>W1511343692
JREV01000052
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
86441
86516
+
Asn
GTT
[ENA]
¡û
>W1511343693
JREV01000052
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
86636
86709
+
Asn
GTT
[ENA]
¡û
>C161052854
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3461073
3460998
-
Asn
GTT
[Ensembl]
¡û
>C161052855
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
3460870
3460795
-
Asn
GTT
[Ensembl]
¡û
>C161060665
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
803055
803130
+
Asn
GTT
[Ensembl]
¡û
>C161060666
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
803250
803323
+
Asn
GTT
[Ensembl]
¡û
>W1710537486
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
1939471
1939396
-
Asn
GTT
[ENA]
¡û
>W1710537487
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
1939276
1939203
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK