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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = CGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10062 (1 seq.)
>PL171001241
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
470544
470637
+
Ser
CGA
[ENA]
¡û
Identical group No.24863 (1 seq.)
>PL173000153
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
470374
470465
+
Ser
CGA
[ENA]
¡û
Identical group No.46148 (42 seq.)
>W1711294782
MABH01000164
Alphaproteobacteria
Cereibacter johrii [MABH]
37370
37281
-
Ser
CGA
[ENA]
¡û
>PL171000285
CP000662
Alphaproteobacteria
Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01
697867
697778
-
Ser
CGA
[Ensembl]
¡û
>C171037031
CP015211
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
15083
14994
-
Ser
CGA
-
¡û
>C171067795
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
1817186
1817097
-
Ser
CGA
-
¡û
>W131058664
ANFS01000059
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
18362
18451
+
Ser
CGA
[ENA]
¡û
>C019256
CP000144
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
15083
14994
-
Ser
CGA
[Ensembl]
¡û
>C019349
CP000578
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
592951
592862
-
Ser
CGA
[Ensembl]
¡û
>WENV180232436
OBCO01000432
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>WENV180233384
OBCP01000433
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>w001247
AAAE01000111
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
10175
10084
-
Ser
CGA
[ENA]
¡û
>WENV180569873
OCLR01000637
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>WENV180570769
OCLS01000535
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>WENV180571759
OCLT01000421
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>WENV180574011
OCLW01000434
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
18923
19012
+
Ser
CGA
[ENA]
¢þ
>WENV180640068
OCRL01000419
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>WENV180641029
OCRM01000445
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
18419
18508
+
Ser
CGA
[ENA]
¢þ
>C181017263
CP015288
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
15083
14994
-
Ser
CGA
-
¡û
>C181084435
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
252588
252499
-
Ser
CGA
-
¡û
>C181191148
CP030272
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
15083
14994
-
Ser
CGA
-
¡û
>C191079683
CP031751
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
656156
656067
-
Ser
CGA
-
¡û
>W09104747
AAME01000053
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
2697
2786
+
Ser
CGA
[ENA]
¡û
>W09104798
AAMF01000015
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
19278
19367
+
Ser
CGA
[ENA]
¡û
>C191151038
CP036420
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
1167385
1167296
-
Ser
CGA
-
¡û
>W1910548886
FZOV01000015
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
18409
18498
+
Ser
CGA
[ENA]
¡û
>W1910574845
JQHS01000004
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
309224
309313
+
Ser
CGA
[ENA]
¡û
>C09109094
CP001151
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
39937
39848
-
Ser
CGA
[Ensembl]
¡û
>W1911491946
OAOQ01000031
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
724
635
-
Ser
CGA
[ENA]
¡û
>W1911495369
OBMT01000009
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
153638
153727
+
Ser
CGA
[ENA]
¡û
>W1911749468
QWGP01000042
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
9112
9023
-
Ser
CGA
[ENA]
¡û
>W1911766300
QXDK01000036
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
1340
1251
-
Ser
CGA
[ENA]
¡û
>W1810116291
PHOB01000144
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
726
637
-
Ser
CGA
[ENA]
¡û
>W1810119967
PHSI01000102
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
17945
18034
+
Ser
CGA
[ENA]
¡û
>W1810463843
PZZW01000006
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
19159
19248
+
Ser
CGA
[ENA]
¡û
>W1810477389
QAOT01000032
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
8502
8413
-
Ser
CGA
[ENA]
¡û
>W1810699124
QMCC01000013
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
19126
19215
+
Ser
CGA
[ENA]
¡û
>W1810785209
QRBG01000040
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
152785
152696
-
Ser
CGA
[ENA]
¡û
>W11160210
AFER01000002
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
210159
210070
-
Ser
CGA
[ENA]
¡û
>C161048391
CP012961
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
15083
14994
-
Ser
CGA
-
¡û
>W121076818
AKBU01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
151390
151301
-
Ser
CGA
[ENA]
¡û
>W121102162
AKVW01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
15083
14994
-
Ser
CGA
[ENA]
¡û
>W1610081494
BDDO01000010
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
54417
54328
-
Ser
CGA
[ENA]
¡û
>W1710080145
BDDO01000010
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
54417
54328
-
Ser
CGA
[ENA]
¡û
Identical group No.49095 (18 seq.)
>W1710785270
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
296202
296113
-
Ser
CGA
[ENA]
¡û
>W1710785675
LJIB01000025
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
24858
24947
+
Ser
CGA
[ENA]
¡û
>W1710861528
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
101736
101825
+
Ser
CGA
[ENA]
¡û
>W1710868579
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
101711
101800
+
Ser
CGA
[ENA]
¡û
>W131036187
ALJF01000009
Alphaproteobacteria
Agrobacterium albertimagni AOL15 [ALJF]
46382
46293
-
Ser
CGA
[ENA]
¡û
>W1711384742
MEDI01000795
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
18
107
+
Ser
CGA
[ENA]
¡û
>PL171001256
CP016500
Alphaproteobacteria
Agrobacterium sp. RAC06 plasmid:pBSY240_1
107625
107714
+
Ser
CGA
[ENA]
¡û
>WENV180022143
FTFQ01000265
[FTFQ] metagenome; soil
1120
1031
-
Ser
CGA
[ENA]
¢þ
>WENV180031375
FTJO01038200
[FTJO] metagenome; soil
871
960
+
Ser
CGA
[ENA]
¢þ
>WENV181414332
OGCL01000223
[OGCL] hot springs metagenome; Hot spring water
62348
62437
+
Ser
CGA
[ENA]
¢þ
>WENV170680695
LFEF01011152
[LFEF] freshwater metagenome; waterbloom
6354
6265
-
Ser
CGA
[ENA]
¢þ
>WENV171003569
NNBU01000546
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
68856
68945
+
Ser
CGA
[ENA]
¢þ
>W1810195492
PKRP01000001
Alphaproteobacteria
Rhizobium sp. TH135 [PKRP]
7065
6976
-
Ser
CGA
[ENA]
¡û
>W1810670706
QJRY01000003
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
404242
404153
-
Ser
CGA
[ENA]
¡û
>W1610649076
LJHS01000012
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
296202
296113
-
Ser
CGA
[ENA]
¡û
>W1610649481
LJIB01000025
Alphaproteobacteria
Rhizobium sp. AAP116 [LJIB]
24858
24947
+
Ser
CGA
[ENA]
¡û
>W1610723874
LMDR01000008
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
101736
101825
+
Ser
CGA
[ENA]
¡û
>W1610730925
LMJE01000008
Alphaproteobacteria
Rhizobium sp. Root274 [LMJE]
101711
101800
+
Ser
CGA
[ENA]
¡û
Identical group No.71927 (1 seq.)
>PL173000054
CP001511
Alphaproteobacteria
Methylobacterium extorquens AM1 plasmid:megaplasmid
1013193
1013282
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK