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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = ACG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297390 (2 seq.)
>CHL1810003189
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
73859
73932
+
Arg
ACG
[ENA]
¡û
>CHL1810003199
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
69898
69825
-
Arg
ACG
[ENA]
¡û
Identical group No.297543 (30 seq.)
>CHL1830001495
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
81449
81376
-
Arg
ACG
[ENA]
¡û
>CHL1830002589
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
100699
100626
-
Arg
ACG
[ENA]
¡û
>CHL1830002604
MG755801
Stramenopiles
Triceratium dubium (MG755801)
85558
85485
-
Arg
ACG
[ENA]
¡û
>CHL1830000038
AP014625
Stramenopiles
Triparma laevis (AP014625)
77496
77421
-
Arg
ACG
[ENA]
¡û
>CHL1830000160
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
95745
95820
+
Arg
ACG
[ENA]
¡û
>CHL1830000164
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
86541
86466
-
Arg
ACG
[ENA]
¡û
>CHL1830000167
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
129006
128931
-
Arg
ACG
[ENA]
¡û
>CHL1830000291
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
95444
95519
+
Arg
ACG
[ENA]
¡û
>CHL1830000427
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
123559
123634
+
Arg
ACG
[ENA]
¡û
>CHL1830000430
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
83313
83238
-
Arg
ACG
[ENA]
¡û
>CHL1830000432
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
134589
134514
-
Arg
ACG
[ENA]
¡û
>CHL1830000436
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
96798
96873
+
Arg
ACG
[ENA]
¡û
>CHL1830000438
KC509524
Stramenopiles
Leptocylindrus danicus ccmp1856 (KC509524)
106760
106835
+
Arg
ACG
[ENA]
¡û
>CHL1830000443
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
74952
74877
-
Arg
ACG
[ENA]
¡û
>CHL1830000555
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
128619
128694
+
Arg
ACG
[ENA]
¡û
>CHL1830000556
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
97967
97892
-
Arg
ACG
[ENA]
¡û
>CHL1830000681
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
74251
74176
-
Arg
ACG
[ENA]
¡û
>CHL1830000686
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
84586
84511
-
Arg
ACG
[ENA]
¡û
>CHL1830000688
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
86370
86295
-
Arg
ACG
[ENA]
¡û
>CHL1830000692
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
84949
84874
-
Arg
ACG
[ENA]
¡û
>CHL1830002585
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
98608
98533
-
Arg
ACG
[ENA]
¡û
>CHL1830002592
MG755796
Stramenopiles
Guinardia striata (MG755796)
99870
99795
-
Arg
ACG
[ENA]
¡û
>CHL1830002594
MG755798
Stramenopiles
Attheya longicornis (MG755798)
90931
90856
-
Arg
ACG
[ENA]
¡û
>CHL1830002597
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
82662
82587
-
Arg
ACG
[ENA]
¡û
>CHL1830002600
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
78368
78293
-
Arg
ACG
[ENA]
¡û
>CHL1830002614
MG755805
Stramenopiles
Biddulphia biddulphiana (MG755805)
77070
76994
-
Arg
ACG
[ENA]
¡û
>CHL1830002618
MG755806
Stramenopiles
Biddulphia tridens (MG755806)
80005
79930
-
Arg
ACG
[ENA]
¡û
>CHL1830002625
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
107011
107086
+
Arg
ACG
[ENA]
¡û
>CHL090200127
EF067921
stramenopiles
Thalassiosira pseudonana
85682
85607
-
Arg
ACG
[ENA]
¡û
>CHL090200172
Z67753
stramenopiles
Odontella sinensis
33891
33964
+
Arg
ACG
[ENA]
¡û
Identical group No.352261 (2 seq.)
>CHL090101371
AY217738
Alveolata
Eimeria tenella
2279
2354
+
Arg
ACG
[ENA]
¡û
>CHL090101390
AY217738
Alveolata
Eimeria tenella
32443
32368
-
Arg
ACG
[ENA]
¡û
Identical group No.629582 (2 seq.)
>CHL090103188
U87145
Alveolata
Toxoplasma gondii
2282
2354
+
Arg
ACG
[ENA]
¡û
>CHL090103203
U87145
Alveolata
Toxoplasma gondii
32715
32643
-
Arg
ACG
[ENA]
¡û
Identical group No.639067 (1 seq.)
>CHL1830002022
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
64477
64551
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK