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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.476573 (28 seq.)
>WENV180038597
LLBY010000546
[LLBY] soil metagenome; soil from tomato rhizosphere
50575
50649
+
Arg
CCG
[ENA]
¢þ
>WENV180041027
LLBZ010035765
[LLBZ] soil metagenome; soil from tomato rhizosphere
3416
3490
+
Arg
CCG
[ENA]
¢þ
>WENV180294567
OBIY01255793
[OBIY] beach sand metagenome; beach sand
68
142
+
Arg
CCG
[ENA]
¢þ
>WENV180309836
OBJS01054318
[OBJS] beach sand metagenome; beach sand
318
390
+
Arg
CCG
[ENA]
¢þ
>WENV180591182
OCOV01002748
[OCOV] marine metagenome; ENVO:01000301
539
467
-
Arg
CCG
[ENA]
¢þ
>WENV181162704
OEIO01007761
[OEIO] marine metagenome; sea ice
829
901
+
Arg
CCG
[ENA]
¢þ
>WENV183616264
OOEC01251966
[OOEC] marine metagenome; sea ice
4
76
+
Arg
CCG
[ENA]
¢þ
>WENV183617418
OOEE01243265
[OOEE] marine metagenome; sea ice
153
225
+
Arg
CCG
[ENA]
¢þ
>WENV183621336
OOFT01053785
[OOFT] marine metagenome; sea ice
482
409
-
Arg
CCG
[ENA]
¢þ
>WENV183621452
OOFU01001318
[OOFU] marine metagenome; sea ice
743
671
-
Arg
CCG
[ENA]
¢þ
>WENV183623311
OOFX01070470
[OOFX] marine metagenome; sea ice
7
79
+
Arg
CCG
[ENA]
¢þ
>WENV183623496
OOGA01005079
[OOGA] marine metagenome; sea ice
693
621
-
Arg
CCG
[ENA]
¢þ
>WENV183625436
OOGF01030349
[OOGF] marine metagenome; seawater
458
532
+
Arg
CCG
[ENA]
¢þ
>WENV183628219
OOGN01000063
[OOGN] marine metagenome; sea ice
1128
1200
+
Arg
CCG
[ENA]
¢þ
>WENV183628441
OOGN01050130
[OOGN] marine metagenome; sea ice
479
407
-
Arg
CCG
[ENA]
¢þ
>WENV183628674
OOGO01007014
[OOGO] marine metagenome; sea ice
840
912
+
Arg
CCG
[ENA]
¢þ
>WENV183630983
OOGU01014117
[OOGU] marine metagenome; sea ice
984
1056
+
Arg
CCG
[ENA]
¢þ
>WENV170024362
BCQL01047908
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
5
77
+
Arg
CCG
[ENA]
¢þ
>WENV170275848
CERM01221817
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
726
654
-
Arg
CCG
[ENA]
¢þ
>WENV170537048
CEWP01346147
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
676
748
+
Arg
CCG
[ENA]
¢þ
>WENV170569213
FLMP01149784
[FLMP] seawater metagenome; seawater
528
456
-
Arg
CCG
[ENA]
¢þ
>WENV170608363
FUWD010927542
[FUWD] metagenome; unknown
74
146
+
Arg
CCG
[ENA]
¢þ
>WENV170639217
JFJP01001701
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
14913
14985
+
Arg
CCG
[ENA]
¢þ
>WENV170639263
JFJP01001719
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
246
318
+
Arg
CCG
[ENA]
¢þ
>CHL1810002660
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
32068
32140
+
Arg
CCG
[ENA]
¡û
>CHL1810005298
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
28976
29048
+
Arg
CCG
[ENA]
¡û
>CHL1810059512
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
44587
44515
-
Arg
CCG
[ENA]
¡û
>SRA1028625
SRR035086.377554
454 Sequencing (SRP001807)
144
72
-
Arg
CCG
[SRA]
Identical group No.480798 (5 seq.)
>WENV181395870
OFSB01013101
[OFSB] freshwater metagenome; Freshwater Lake
259
186
-
Arg
CCG
[ENA]
¢þ
>CHL1810000408
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
11353
11281
-
Arg
CCG
[ENA]
¡û
>CHL1810002633
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
29488
29561
+
Arg
CCG
[ENA]
¡û
>CHL1810010622
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
40403
40475
+
Arg
CCG
[ENA]
¡û
>CHL1810059410
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
30057
30131
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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