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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = GCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15531 (1 seq.)
>CHL090101379
AY217738
Alveolata
Eimeria tenella
6432
6523
+
Ser
GCT
[ENA]
¡û
Identical group No.18908 (1 seq.)
>CHL090103193
U87145
Alveolata
Toxoplasma gondii
6610
6699
+
Ser
GCT
[ENA]
¡û
Identical group No.44561 (1 seq.)
>CHL1810046770
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
35510
35599
+
Ser
GCT
[ENA]
¡û
Identical group No.49121 (1 seq.)
>CHL1810003209
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
55935
55848
-
Ser
GCT
[ENA]
¡û
Identical group No.49127 (9 seq.)
>WENV180082214
MPMC02196916
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
335
247
-
Ser
GCT
[ENA]
¢þ
>WENV183617620
OOEG01020951
[OOEG] marine metagenome; sea ice
121
33
-
Ser
GCT
[ENA]
¢þ
>WENV183627983
OOGM01000206
[OOGM] marine metagenome; sea ice
337
425
+
Ser
GCT
[ENA]
¢þ
>CHL1810002631
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
17496
17585
+
Ser
GCT
[ENA]
¡û
>CHL1810005294
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
17192
17278
+
Ser
GCT
[ENA]
¡û
>CHL1810008290
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
11278
11190
-
Ser
GCT
[ENA]
¡û
>CHL1810008410
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
49063
49151
+
Ser
GCT
[ENA]
¡û
>CHL1810010620
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
28162
28250
+
Ser
GCT
[ENA]
¡û
>CHL1810059242
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
7819
7907
+
Ser
GCT
[ENA]
¡û
Identical group No.61182 (1 seq.)
>CHL1810002658
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
20207
20296
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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