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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480773 (1 seq.)
>CHL1810003182
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
36013
36085
+
Glu
TTC
[ENA]
¡û
Identical group No.480899 (28 seq.)
>CHL1830000024
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
109672
109599
-
Glu
TTC
[ENA]
¡û
>CHL1830000159
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
39656
39730
+
Glu
TTC
[ENA]
¡û
>CHL1830000165
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
12019
11945
-
Glu
TTC
[ENA]
¡û
>CHL1830000168
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
14114
14040
-
Glu
TTC
[ENA]
¡û
>CHL1830000292
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
11853
11781
-
Glu
TTC
[ENA]
¡û
>CHL1830000426
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
19092
19164
+
Glu
TTC
[ENA]
¡û
>CHL1830000431
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
11691
11619
-
Glu
TTC
[ENA]
¡û
>CHL1830000557
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
12573
12499
-
Glu
TTC
[ENA]
¡û
>CHL1830000679
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
36329
36403
+
Glu
TTC
[ENA]
¡û
>CHL1830000683
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
18063
17991
-
Glu
TTC
[ENA]
¡û
>CHL1830000685
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
54633
54708
+
Glu
TTC
[ENA]
¡û
>CHL1830000687
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
37162
37234
+
Glu
TTC
[ENA]
¡û
>CHL1830000691
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
54700
54774
+
Glu
TTC
[ENA]
¡û
>CHL1830002583
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
1916
1842
-
Glu
TTC
[ENA]
¡û
>CHL1830002586
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
18306
18234
-
Glu
TTC
[ENA]
¡û
>CHL1830002587
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
38349
38421
+
Glu
TTC
[ENA]
¡û
>CHL1830002591
MG755796
Stramenopiles
Guinardia striata (MG755796)
43561
43635
+
Glu
TTC
[ENA]
¡û
>CHL1830002595
MG755798
Stramenopiles
Attheya longicornis (MG755798)
20347
20275
-
Glu
TTC
[ENA]
¡û
>CHL1830002598
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
11798
11724
-
Glu
TTC
[ENA]
¡û
>CHL1830002601
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
11988
11914
-
Glu
TTC
[ENA]
¡û
>CHL1830002602
MG755801
Stramenopiles
Triceratium dubium (MG755801)
33757
33831
+
Glu
TTC
[ENA]
¡û
>CHL1830002606
MG755802
Stramenopiles
Rhizosolenia fallax (MG755802)
18547
18475
-
Glu
TTC
[ENA]
¡û
>CHL1830002609
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
30112
30037
-
Glu
TTC
[ENA]
¡û
>CHL1830002611
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
54854
54928
+
Glu
TTC
[ENA]
¡û
>CHL1830002623
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
35110
35182
+
Glu
TTC
[ENA]
¡û
>CHL090200124
EF067920
stramenopiles
Phaeodactylum tricornutum
12218
12144
-
Glu
TTC
[ENA]
¡û
>CHL090200126
EF067921
stramenopiles
Thalassiosira pseudonana
55335
55408
+
Glu
TTC
[ENA]
¡û
>W1630017696
LSSF01000062
Unclassified
Thermoplasmatales archaeon SG8-52-4 [LSSF]
2536
2608
+
Glu
TTC
[ENA]
¡û
Identical group No.541123 (1 seq.)
>CHL090200064
AY217738
Alveolata
Eimeria tenella
6745
6817
+
Glu
TTC
[ENA]
¡û
Identical group No.629587 (1 seq.)
>CHL090200158
U87145
Alveolata
Toxoplasma gondii
6924
6996
+
Glu
TTC
[ENA]
¡û
Identical group No.770474 (1 seq.)
>CHL1830002020
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
10446
10517
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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