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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = GTA
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97751 (2 seq.)
>W141734170
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
414711
414624
-
Tyr
GTA
[ENA]
¡û
>W141734258
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1799104
1799191
+
Tyr
GTA
[ENA]
¡û
Identical group No.103045 (1 seq.)
>W1911493121
OBEI01000012
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
2387
2474
+
Tyr
GTA
[ENA]
¡û
Identical group No.105993 (1 seq.)
>C09108588
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1122330
1122417
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.107247 (1 seq.)
>C10113053
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
605723
605639
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.111721 (1 seq.)
>C000016
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
1356575
1356659
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.113966 (9 seq.)
>WENV181407455
OGCG01028920
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
725
811
+
Tyr
GTA
[ENA]
¢þ
>C08005573
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
222223
222309
+
Tyr
GTA
[Ensembl]
¡û
>W09107150
ABFI01000049
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
2479
2393
-
Tyr
GTA
[ENA]
¡û
>C151003642
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
219553
219639
+
Tyr
GTA
[Ensembl]
¡û
>C151003686
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
219589
219675
+
Tyr
GTA
[Ensembl]
¡û
>W10115208
ADJO01000008
Aquificota
Hydrogenobaculum sp. SN [ADJO]
61307
61393
+
Tyr
GTA
[ENA]
¡û
>W11118794
ADJO01000008
Aquificota
Hydrogenobaculum sp. SN [ADJO]
61307
61393
+
Tyr
GTA
[ENA]
¡û
>C131013382
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
219587
219673
+
Tyr
GTA
[Ensembl]
¡û
>C131013693
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
219549
219635
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.115621 (2 seq.)
>WENV181229152
OFEJ01000787
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
9320
9404
+
Tyr
GTA
[ENA]
¢þ
>C141011687
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1307028
1307112
+
Tyr
GTA
-
¡û
Identical group No.123777 (2 seq.)
>C10107857
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
901251
901337
+
Tyr
GTA
-
¡û
>C11111330
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
901241
901327
+
Tyr
GTA
-
¡û
Identical group No.130201 (1 seq.)
>W08004315
ABHJ01000001
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
310408
310494
+
Tyr
GTA
[ENA]
¡û
Identical group No.135345 (3 seq.)
>WENV181405205
OGCB01025710
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
295
379
+
Tyr
GTA
[ENA]
¢þ
>WENV181408595
OGCH01006320
[OGCH] hot springs metagenome; hot springs
96
12
-
Tyr
GTA
[ENA]
¢þ
>W141730229
JNIE01000006
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
855
771
-
Tyr
GTA
[ENA]
¡û
Identical group No.144882 (1 seq.)
>W1911493347
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
5811
5727
-
Tyr
GTA
[ENA]
¡û
Identical group No.154715 (3 seq.)
>C08010708
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
315046
314962
-
Tyr
GTA
[Ensembl]
¡û
>W09107738
ABLS01000077
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
6940
6856
-
Tyr
GTA
[ENA]
¡û
>W09114579
ABZS01000228
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
983
1067
+
Tyr
GTA
[ENA]
¡û
Identical group No.157891 (3 seq.)
>W131217746
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
1291720
1291805
+
Tyr
GTA
[ENA]
¡û
>W1711589777
MOEN01000010
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
17704
17619
-
Tyr
GTA
[ENA]
¡û
>W1910547806
FZOB01000019
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
7919
7834
-
Tyr
GTA
[ENA]
¡û
Identical group No.161570 (4 seq.)
>WENV181209593
OFBE01012254
[OFBE] metagenome; hydrothermal vent
302
387
+
Tyr
GTA
[ENA]
¢þ
>WENV181211131
OFBJ01011017
[OFBJ] metagenome; hydrothermal vent
437
522
+
Tyr
GTA
[ENA]
¢þ
>WENV181211327
OFBK01001897
[OFBK] metagenome; hydrothermal vent
394
479
+
Tyr
GTA
[ENA]
¢þ
>C11122359
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
289123
289038
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.161575 (9 seq.)
>WENV180287689
OBIL01000290
[OBIL] metagenome; hydrothermal vent
517
602
+
Tyr
GTA
[ENA]
¢þ
>WENV181212866
OFBU01000632
[OFBU] metagenome; hydrothermal vent
1959
2044
+
Tyr
GTA
[ENA]
¢þ
>WENV181213377
OFBV01001007
[OFBV] metagenome; hydrothermal vent
582
497
-
Tyr
GTA
[ENA]
¢þ
>WENV181213989
OFBW01005043
[OFBW] metagenome; hydrothermal vent
354
269
-
Tyr
GTA
[ENA]
¢þ
>WENV181214926
OFBZ01000099
[OFBZ] metagenome; hydrothermal vent
5539
5454
-
Tyr
GTA
[ENA]
¢þ
>WENV181215450
OFCA01000419
[OFCA] metagenome; hydrothermal vent
5002
5087
+
Tyr
GTA
[ENA]
¢þ
>WENV181215968
OFCB01000586
[OFCB] metagenome; hydrothermal vent
1276
1361
+
Tyr
GTA
[ENA]
¢þ
>WENV181216466
OFCC01000252
[OFCC] metagenome; hydrothermal vent
904
989
+
Tyr
GTA
[ENA]
¢þ
>C11107379
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
351998
352083
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.171786 (1 seq.)
>C161000090
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
1476199
1476114
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.174541 (1 seq.)
>C09109130
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
992
908
-
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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