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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = TCC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303154 (15 seq.)
>W131217747
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
1291810
1291886
+
Gly
TCC
[ENA]
¡û
>W1711589778
MOEN01000010
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
17614
17538
-
Gly
TCC
[ENA]
¡û
>WENV180287690
OBIL01000290
[OBIL] metagenome; hydrothermal vent
610
686
+
Gly
TCC
[ENA]
¢þ
>WENV181211329
OFBK01001897
[OFBK] metagenome; hydrothermal vent
566
642
+
Gly
TCC
[ENA]
¢þ
>WENV181212867
OFBU01000632
[OFBU] metagenome; hydrothermal vent
2052
2128
+
Gly
TCC
[ENA]
¢þ
>WENV181213378
OFBV01001007
[OFBV] metagenome; hydrothermal vent
489
413
-
Gly
TCC
[ENA]
¢þ
>WENV181213990
OFBW01005043
[OFBW] metagenome; hydrothermal vent
261
185
-
Gly
TCC
[ENA]
¢þ
>WENV181214927
OFBZ01000099
[OFBZ] metagenome; hydrothermal vent
5446
5370
-
Gly
TCC
[ENA]
¢þ
>WENV181215451
OFCA01000419
[OFCA] metagenome; hydrothermal vent
5095
5171
+
Gly
TCC
[ENA]
¢þ
>WENV181215969
OFCB01000586
[OFCB] metagenome; hydrothermal vent
1369
1445
+
Gly
TCC
[ENA]
¢þ
>WENV181216467
OFCC01000252
[OFCC] metagenome; hydrothermal vent
997
1073
+
Gly
TCC
[ENA]
¢þ
>W1910547807
FZOB01000019
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
7829
7753
-
Gly
TCC
[ENA]
¡û
>C11107380
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
352091
352167
+
Gly
TCC
[Ensembl]
¡û
>C11107407
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
1115012
1114936
-
Gly
TCC
[Ensembl]
¡û
>C11122361
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
288952
288876
-
Gly
TCC
[Ensembl]
¡û
Identical group No.460956 (5 seq.)
>C08010709
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
314952
314879
-
Gly
TCC
[Ensembl]
¡û
>W09107739
ABLS01000077
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
6846
6773
-
Gly
TCC
[ENA]
¡û
>W09114580
ABZS01000228
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1077
1150
+
Gly
TCC
[ENA]
¡û
>C09109131
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
900
825
-
Gly
TCC
[Ensembl]
¡û
>ENV09004217
ADKK01000176
Hot springs metagenome ctg_1106445177583
35893
35966
+
Gly
TCC
[ENA]
¡û
Identical group No.470434 (10 seq.)
>C000017
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
1356669
1356744
+
Gly
TCC
[Ensembl]
¡û
>WENV180634573
OCRB01034618
[OCRB] metagenome; diffuse fluid
320
246
-
Gly
TCC
[ENA]
¢þ
>WENV181209129
OFBD01007711
[OFBD] metagenome; hydrothermal vent
706
632
-
Gly
TCC
[ENA]
¢þ
>WENV181209451
OFBE01003415
[OFBE] metagenome; hydrothermal vent
725
650
-
Gly
TCC
[ENA]
¢þ
>WENV181210520
OFBH01007310
[OFBH] metagenome; hydrothermal vent
760
835
+
Gly
TCC
[ENA]
¢þ
>WENV181211353
OFBK01002553
[OFBK] metagenome; hydrothermal vent
1168
1243
+
Gly
TCC
[ENA]
¢þ
>WENV181211742
OFBL01004870
[OFBL] metagenome; hydrothermal vent
658
733
+
Gly
TCC
[ENA]
¢þ
>WENV181211889
OFBM01000867
[OFBM] metagenome; hydrothermal vent
1934
2008
+
Gly
TCC
[ENA]
¢þ
>WENV181225099
OFDH01004032
[OFDH] metagenome; hydrothermal vent
1136
1063
-
Gly
TCC
[ENA]
¢þ
>WENV181226523
OFDL01005880
[OFDL] metagenome; hydrothermal vent
805
730
-
Gly
TCC
[ENA]
¢þ
Identical group No.540931 (1 seq.)
>W08004316
ABHJ01000001
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
310499
310572
+
Gly
TCC
[ENA]
¡û
Identical group No.541889 (4 seq.)
>W141734171
JNLJ01000001
Aquificota
Persephonella sp. IF05-L8 [JNLJ]
414609
414534
-
Gly
TCC
[ENA]
¡û
>W141734259
JNLL01000001
Aquificota
Persephonella sp. KM09-Lau-8 [JNLL]
1799206
1799281
+
Gly
TCC
[ENA]
¡û
>C09108589
CP001230
Aquificota
Persephonella marina EX-H1 [CP001230]
1122427
1122502
+
Gly
TCC
[Ensembl]
¡û
>W1911493122
OBEI01000012
Aquificota
Persephonella hydrogeniphila DSM 15103 [OBEI]
2485
2560
+
Gly
TCC
[ENA]
¡û
Identical group No.658374 (8 seq.)
>C08005574
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
222314
222387
+
Gly
TCC
[Ensembl]
¡û
>W09107151
ABFI01000049
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
2388
2315
-
Gly
TCC
[ENA]
¡û
>C151003643
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
219644
219717
+
Gly
TCC
[Ensembl]
¡û
>C151003687
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
219680
219753
+
Gly
TCC
[Ensembl]
¡û
>W10115209
ADJO01000008
Aquificota
Hydrogenobaculum sp. SN [ADJO]
61398
61471
+
Gly
TCC
[ENA]
¡û
>W11118795
ADJO01000008
Aquificota
Hydrogenobaculum sp. SN [ADJO]
61398
61471
+
Gly
TCC
[ENA]
¡û
>C131013383
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
219678
219751
+
Gly
TCC
[Ensembl]
¡û
>C131013694
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
219640
219713
+
Gly
TCC
[Ensembl]
¡û
Identical group No.663977 (7 seq.)
>WENV181229153
OFEJ01000787
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
9409
9481
+
Gly
TCC
[ENA]
¢þ
>WENV181285380
OFGS01000076
[OFGS] hot springs metagenome; Water and soil
13412
13339
-
Gly
TCC
[ENA]
¢þ
>WENV181285518
OFGS01001289
[OFGS] hot springs metagenome; Water and soil
51
124
+
Gly
TCC
[ENA]
¢þ
>WENV181405134
OGCB01015499
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
360
287
-
Gly
TCC
[ENA]
¢þ
>W141730230
JNIE01000006
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
767
694
-
Gly
TCC
[ENA]
¡û
>C141011688
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1307117
1307189
+
Gly
TCC
-
¡û
>C10113054
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
605631
605559
-
Gly
TCC
[Ensembl]
¡û
Identical group No.687965 (9 seq.)
>WENV180013782
FMSI01170365
[FMSI] soil metagenome; Soil
30
103
+
Gly
TCC
[ENA]
¢þ
>WENV180014047
FPIC01037497
[FPIC] soil metagenome; Soil
1
74
+
Gly
TCC
[ENA]
¢þ
>WENV180037509
FVAA011152213
[FVAA] soil metagenome; Soil
130
57
-
Gly
TCC
[ENA]
¢þ
>WENV181222852
OFDC01000402
[OFDC] hot springs metagenome; Water
3747
3820
+
Gly
TCC
[ENA]
¢þ
>WENV181404446
OGCA01004271
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
80
153
+
Gly
TCC
[ENA]
¢þ
>WENV170574072
FLYM01003327
[FLYM] hot springs metagenome; Sediment
217
144
-
Gly
TCC
[ENA]
¢þ
>W1911493348
OBEN01000001
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
5725
5651
-
Gly
TCC
[ENA]
¡û
>C10107858
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
901338
901410
+
Gly
TCC
-
¡û
>C11111331
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
901328
901400
+
Gly
TCC
-
¡û
Identical group No.739515 (1 seq.)
>C161000091
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
1476110
1476036
-
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK