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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123460 (4 seq.)
>W1711666807
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
2818033
2817947
-
Leu
CAG
[ENA]
¡û
>W1711666859
MRCJ01000005
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
173938
173852
-
Leu
CAG
[ENA]
¡û
>SRA1000006
SRR000281.3148
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
9
-
Leu
CAG
[SRA]
>SRA1000014
SRR000281.16241
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
95
9
-
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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