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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525499 (11 seq.)
>WENV180359149
OBNR01010609
[OBNR] marine metagenome; Seawater_00002010_00002149
126
51
-
Gln
CTG
[ENA]
¢þ
>WENV180376481
OBOM01013935
[OBOM] marine metagenome; Seawater
303
378
+
Gln
CTG
[ENA]
¢þ
>WENV180636744
OCRF01053752
[OCRF] marine metagenome; niskin bottle
447
522
+
Gln
CTG
[ENA]
¢þ
>WENV018848
AACY020519973
Marine microbial communities from Global Ocean Sampling (GOS)
1529
1452
-
Gln
CTG
[ENA]
>SRA1000043
SRR000284.27148
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
81
6
-
Gln
CTG
[SRA]
>WENV068934
AACY023744762
Marine microbial communities from Global Ocean Sampling (GOS)
437
360
-
Gln
CTG
[ENA]
>WENV069150
AACY023754719
Marine microbial communities from Global Ocean Sampling (GOS)
1000
1077
+
Gln
CTG
[ENA]
>WENV069328
AACY023761628
Marine microbial communities from Global Ocean Sampling (GOS)
872
795
-
Gln
CTG
[ENA]
>WENV069345
AACY023762731
Marine microbial communities from Global Ocean Sampling (GOS)
199
122
-
Gln
CTG
[ENA]
>WENV069810
AACY023784359
Marine microbial communities from Global Ocean Sampling (GOS)
277
200
-
Gln
CTG
[ENA]
>WENV074153
AACY023959879
Marine microbial communities from Global Ocean Sampling (GOS)
259
336
+
Gln
CTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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