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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112376 (45 seq.)
>W1711272472
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522673
522587
-
Leu
CAA
[ENA]
¡û
>C171019744
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
746339
746425
+
Leu
CAA
-
¡û
>C171063615
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
686631
686717
+
Leu
CAA
-
¡û
>C171100346
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
670116
670202
+
Leu
CAA
-
¡û
>C171100391
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
627794
627880
+
Leu
CAA
-
¡û
>C171100436
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
712557
712643
+
Leu
CAA
-
¡û
>C171100482
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
678413
678499
+
Leu
CAA
-
¡û
>C171101357
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
688174
688260
+
Leu
CAA
-
¡û
>C171101924
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
609781
609867
+
Leu
CAA
-
¡û
>C171101970
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
594624
594710
+
Leu
CAA
-
¡û
>C171102511
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
645612
645698
+
Leu
CAA
-
¡û
>C007590
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
719655
719741
+
Leu
CAA
[Ensembl]
¡û
>C007637
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
640554
640640
+
Leu
CAA
[Ensembl]
¡û
>C007683
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
740836
740922
+
Leu
CAA
[Ensembl]
¡û
>W08002836
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
126674
126591
-
Leu
CAA
[ENA]
¡û
>WENV170659005
JXWO01000028
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
39831
39917
+
Leu
CAA
[ENA]
¢þ
>C181003129
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
652121
652207
+
Leu
CAA
-
¡û
>C191160372
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
665931
666017
+
Leu
CAA
-
¡û
>W09105063
AAOM01000024
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
5429
5515
+
Leu
CAA
[ENA]
¡û
>W141809054
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
505359
505273
-
Leu
CAA
[ENA]
¡û
>C141007760
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
672870
672956
+
Leu
CAA
[Ensembl]
¡û
>W1810107546
PHFC01000047
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
629
543
-
Leu
CAA
[ENA]
¡û
>W1810107590
PHFD01000098
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
5404
5490
+
Leu
CAA
[ENA]
¡û
>W1810266191
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
404109
404195
+
Leu
CAA
[ENA]
¡û
>W1810603263
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
464490
464576
+
Leu
CAA
[ENA]
¡û
>W1810603305
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
551078
551164
+
Leu
CAA
[ENA]
¡û
>C151003203
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
653088
653174
+
Leu
CAA
[Ensembl]
¡û
>C151015120
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
692262
692348
+
Leu
CAA
[Ensembl]
¡û
>C151015167
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
662468
662554
+
Leu
CAA
[Ensembl]
¡û
>C151015213
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
610975
611061
+
Leu
CAA
[Ensembl]
¡û
>W10109929
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456433
456519
+
Leu
CAA
[ENA]
¡û
>C10105204
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
657682
657768
+
Leu
CAA
[Ensembl]
¡û
>C10105250
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
664838
664924
+
Leu
CAA
[Ensembl]
¡û
>W11112366
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
456433
456519
+
Leu
CAA
[ENA]
¡û
>C161000325
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
690091
690177
+
Leu
CAA
-
¡û
>C161031496
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
651399
651485
+
Leu
CAA
[Ensembl]
¡û
>C131012535
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
752778
752864
+
Leu
CAA
[Ensembl]
¡û
>C131012581
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
687319
687405
+
Leu
CAA
[Ensembl]
¡û
>W1610521009
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563206
563292
+
Leu
CAA
[ENA]
¡û
>W1610521052
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67615
67529
-
Leu
CAA
[ENA]
¡û
>W1610541314
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
603871
603957
+
Leu
CAA
[ENA]
¡û
>W1611032000
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
522673
522587
-
Leu
CAA
[ENA]
¡û
>W1710617259
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
563206
563292
+
Leu
CAA
[ENA]
¡û
>W1710617302
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
67615
67529
-
Leu
CAA
[ENA]
¡û
>W1710644445
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
603871
603957
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK