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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452428 (36 seq.)
>W1711272501
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
67503
67578
+
Val
CAC
[ENA]
¡û
>C171019736
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
245783
245858
+
Val
CAC
-
¡û
>C171063607
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
152551
152626
+
Val
CAC
-
¡û
>C171100428
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
149737
149812
+
Val
CAC
-
¡û
>C171100474
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
126837
126912
+
Val
CAC
-
¡û
>C171101349
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
168724
168799
+
Val
CAC
-
¡û
>C171101916
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
126399
126474
+
Val
CAC
-
¡û
>C171101962
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
127655
127730
+
Val
CAC
-
¡û
>C171102503
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
126791
126866
+
Val
CAC
-
¡û
>C007627
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
223859
223784
-
Val
CAC
[Ensembl]
¡û
>C007629
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
165392
165467
+
Val
CAC
[Ensembl]
¡û
>W08002846
ABFQ01000006
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
70462
70537
+
Val
CAC
[ENA]
¡û
>WENV170659010
JXWO01000031
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
58103
58178
+
Val
CAC
[ENA]
¢þ
>W09105037
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
354564
354489
-
Val
CAC
[ENA]
¡û
>C191160364
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
121104
121179
+
Val
CAC
-
¡û
>W141809046
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
1040382
1040307
-
Val
CAC
[ENA]
¡û
>C141007752
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
171505
171580
+
Val
CAC
[Ensembl]
¡û
>W1810107581
PHFC01000243
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
77
2
-
Val
CAC
[ENA]
¡û
>W1810603255
QGLC01000008
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
63554
63629
+
Val
CAC
[ENA]
¡û
>W1810603297
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
63220
63295
+
Val
CAC
[ENA]
¡û
>C151003195
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
138275
138350
+
Val
CAC
[Ensembl]
¡û
>C151015112
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
177509
177584
+
Val
CAC
[Ensembl]
¡û
>C151015205
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
144009
144084
+
Val
CAC
[Ensembl]
¡û
>W10109967
ADBO01000004
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
59270
59345
+
Val
CAC
[ENA]
¡û
>C10105196
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
174114
174189
+
Val
CAC
[Ensembl]
¡û
>C10105242
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
161904
161979
+
Val
CAC
[Ensembl]
¡û
>W11112404
ADBO01000004
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
59270
59345
+
Val
CAC
[ENA]
¡û
>C161000317
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
200990
201065
+
Val
CAC
-
¡û
>C161031488
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
116320
116395
+
Val
CAC
[Ensembl]
¡û
>C131012527
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
188241
188316
+
Val
CAC
[Ensembl]
¡û
>C131012573
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
115869
115944
+
Val
CAC
[Ensembl]
¡û
>W1610521001
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
58232
58307
+
Val
CAC
[ENA]
¡û
>W1610541306
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
70162
70237
+
Val
CAC
[ENA]
¡û
>W1611032029
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
67503
67578
+
Val
CAC
[ENA]
¡û
>W1710617251
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
58232
58307
+
Val
CAC
[ENA]
¡û
>W1710644437
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
70162
70237
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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