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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653773 (44 seq.)
>W1711272467
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
636223
636149
-
Met
CAT
[ENA]
¡û
>W1711272505
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
511114
511188
+
Met
CAT
[ENA]
¡û
>C007586
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
655617
655691
+
Met
CAT
[Ensembl]
¡û
>C007633
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
568336
568410
+
Met
CAT
[Ensembl]
¡û
>C171019740
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
682403
682477
+
Met
CAT
-
¡û
>C171063611
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
622609
622683
+
Met
CAT
-
¡û
>C171100342
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
606293
606367
+
Met
CAT
-
¡û
>C171100387
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
563971
564045
+
Met
CAT
-
¡û
>C171100432
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
648513
648587
+
Met
CAT
-
¡û
>C171100478
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
614369
614443
+
Met
CAT
-
¡û
>C171101353
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
624132
624206
+
Met
CAT
-
¡û
>C171101920
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
545741
545815
+
Met
CAT
-
¡û
>C171101966
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
530583
530657
+
Met
CAT
-
¡û
>C171102507
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
581599
581673
+
Met
CAT
-
¡û
>WENV170659016
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
27018
27092
+
Met
CAT
[ENA]
¢þ
>C181003125
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
546866
546940
+
Met
CAT
-
¡û
>C191160368
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
601908
601982
+
Met
CAT
-
¡û
>W141809050
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
569382
569308
-
Met
CAT
[ENA]
¡û
>C141007756
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
572135
572209
+
Met
CAT
[Ensembl]
¡û
>W1810107553
PHFC01000052
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2121
2047
-
Met
CAT
[ENA]
¡û
>W1810107620
PHFD01000414
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
352
278
-
Met
CAT
[ENA]
¡û
>W1810266187
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
340276
340350
+
Met
CAT
[ENA]
¡û
>W1810603259
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
400479
400553
+
Met
CAT
[ENA]
¡û
>W1810603301
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
487086
487160
+
Met
CAT
[ENA]
¡û
>C151003199
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
589161
589235
+
Met
CAT
[Ensembl]
¡û
>C151015116
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
628326
628400
+
Met
CAT
[Ensembl]
¡û
>C151015163
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
596659
596733
+
Met
CAT
[Ensembl]
¡û
>C151015209
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
546951
547025
+
Met
CAT
[Ensembl]
¡û
>W10109925
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
392393
392467
+
Met
CAT
[ENA]
¡û
>C10105200
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
593641
593715
+
Met
CAT
[Ensembl]
¡û
>C10105246
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
600894
600968
+
Met
CAT
[Ensembl]
¡û
>W11112362
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
392393
392467
+
Met
CAT
[ENA]
¡û
>C161000321
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
626047
626121
+
Met
CAT
-
¡û
>C161031492
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
587376
587450
+
Met
CAT
[Ensembl]
¡û
>C131012531
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
688736
688810
+
Met
CAT
[Ensembl]
¡û
>C131012577
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
623279
623353
+
Met
CAT
[Ensembl]
¡û
>W1610521005
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
499166
499240
+
Met
CAT
[ENA]
¡û
>W1610521048
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133395
133321
-
Met
CAT
[ENA]
¡û
>W1610541310
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
539827
539901
+
Met
CAT
[ENA]
¡û
>W1611031995
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
636223
636149
-
Met
CAT
[ENA]
¡û
>W1611032033
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
511114
511188
+
Met
CAT
[ENA]
¡û
>W1710617255
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
499166
499240
+
Met
CAT
[ENA]
¡û
>W1710617298
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133395
133321
-
Met
CAT
[ENA]
¡û
>W1710644441
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
539827
539901
+
Met
CAT
[ENA]
¡û
Identical group No.653781 (46 seq.)
>W1711272477
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
71546
71472
-
Met
CAT
[ENA]
¡û
>W1711272528
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
226755
226829
+
Met
CAT
[ENA]
¡û
>C007595
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1112963
1113037
+
Met
CAT
[Ensembl]
¡û
>C007642
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1006848
1006922
+
Met
CAT
[Ensembl]
¡û
>C007688
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1197631
1197705
+
Met
CAT
[Ensembl]
¡û
>C171019749
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1220739
1220813
+
Met
CAT
-
¡û
>C171063620
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1090718
1090792
+
Met
CAT
-
¡û
>C171100351
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1105768
1105842
+
Met
CAT
-
¡û
>C171100396
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1048175
1048249
+
Met
CAT
-
¡û
>C171100441
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1174914
1174988
+
Met
CAT
-
¡û
>C171100487
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1140770
1140844
+
Met
CAT
-
¡û
>C171101362
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1089579
1089653
+
Met
CAT
-
¡û
>C171101929
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
998109
998183
+
Met
CAT
-
¡û
>C171101975
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1015821
1015895
+
Met
CAT
-
¡û
>C171102516
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1066981
1067055
+
Met
CAT
-
¡û
>W08002847
ABFQ01000007
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
15374
15448
+
Met
CAT
[ENA]
¡û
>WENV170658987
JXWO01000008
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
12713
12787
+
Met
CAT
[ENA]
¢þ
>C181003134
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1061221
1061295
+
Met
CAT
-
¡û
>C191160377
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1087608
1087682
+
Met
CAT
-
¡û
>W141809059
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
138928
138854
-
Met
CAT
[ENA]
¡û
>W09105044
AAOM01000003
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
48353
48427
+
Met
CAT
[ENA]
¡û
>C141007765
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1067893
1067967
+
Met
CAT
[Ensembl]
¡û
>W1810107544
PHFC01000033
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
928
1002
+
Met
CAT
[ENA]
¡û
>W1810266165
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
228497
228571
+
Met
CAT
[ENA]
¡û
>W1810603283
QGLC01000011
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
125797
125871
+
Met
CAT
[ENA]
¡û
>W1810603323
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
129015
129089
+
Met
CAT
[ENA]
¡û
>C151003208
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1051994
1052068
+
Met
CAT
[Ensembl]
¡û
>C151015126
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1110174
1110248
+
Met
CAT
[Ensembl]
¡û
>C151015172
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1113384
1113458
+
Met
CAT
[Ensembl]
¡û
>C151015218
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1020047
1020121
+
Met
CAT
[Ensembl]
¡û
>W10109951
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
117686
117760
+
Met
CAT
[ENA]
¡û
>C10105209
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1003470
1003544
+
Met
CAT
[Ensembl]
¡û
>C10105255
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1019955
1020029
+
Met
CAT
[Ensembl]
¡û
>W11112388
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
117686
117760
+
Met
CAT
[ENA]
¡û
>C161000330
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1072927
1073001
+
Met
CAT
-
¡û
>C161031501
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1054064
1054138
+
Met
CAT
[Ensembl]
¡û
>C131012540
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1119138
1119212
+
Met
CAT
[Ensembl]
¡û
>C131012586
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1103335
1103409
+
Met
CAT
[Ensembl]
¡û
>W1610520981
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
324578
324652
+
Met
CAT
[ENA]
¡û
>W1610521031
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
144948
144874
-
Met
CAT
[ENA]
¡û
>W1610541319
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1003867
1003941
+
Met
CAT
[ENA]
¡û
>W1611032005
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
71546
71472
-
Met
CAT
[ENA]
¡û
>W1611032056
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
226755
226829
+
Met
CAT
[ENA]
¡û
>W1710617231
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
324578
324652
+
Met
CAT
[ENA]
¡û
>W1710617281
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
144948
144874
-
Met
CAT
[ENA]
¡û
>W1710644450
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1003867
1003941
+
Met
CAT
[ENA]
¡û
Identical group No.653782 (43 seq.)
>W1711272463
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
885341
885415
+
Met
CAT
[ENA]
¡û
>W1711272513
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
259413
259339
-
Met
CAT
[ENA]
¡û
>C007625
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
403922
403848
-
Met
CAT
[Ensembl]
¡û
>C007672
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
316620
316546
-
Met
CAT
[Ensembl]
¡û
>C171019775
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
431926
431852
-
Met
CAT
-
¡û
>C171063650
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
370903
370829
-
Met
CAT
-
¡û
>C171100380
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
342670
342596
-
Met
CAT
-
¡û
>C171100425
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
314429
314355
-
Met
CAT
-
¡û
>C171100471
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
396804
396730
-
Met
CAT
-
¡û
>C171100517
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
362660
362586
-
Met
CAT
-
¡û
>C171101392
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
372428
372354
-
Met
CAT
-
¡û
>C171101959
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
294219
294145
-
Met
CAT
-
¡û
>C171102005
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
278876
278802
-
Met
CAT
-
¡û
>C171102546
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
329891
329817
-
Met
CAT
-
¡û
>W08002866
ABFQ01000017
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
11347
11421
+
Met
CAT
[ENA]
¡û
>C181003164
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
298142
298068
-
Met
CAT
-
¡û
>C191160407
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
350202
350128
-
Met
CAT
-
¡û
>W141809039
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
821036
821110
+
Met
CAT
[ENA]
¡û
>W09105049
AAOM01000009
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
1548
1474
-
Met
CAT
[ENA]
¡û
>C141007795
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
321617
321543
-
Met
CAT
[Ensembl]
¡û
>W1810107575
PHFC01000191
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
901
827
-
Met
CAT
[ENA]
¡û
>W1810107609
PHFD01000173
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
3563
3637
+
Met
CAT
[ENA]
¡û
>W1810266207
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
91504
91430
-
Met
CAT
[ENA]
¡û
>C151003238
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
338727
338653
-
Met
CAT
[Ensembl]
¡û
>C151015156
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
377849
377775
-
Met
CAT
[Ensembl]
¡û
>C151015202
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
347174
347100
-
Met
CAT
[Ensembl]
¡û
>C151015248
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
295234
295160
-
Met
CAT
[Ensembl]
¡û
>W10109949
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
140685
140611
-
Met
CAT
[ENA]
¡û
>C10105239
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
341933
341859
-
Met
CAT
[Ensembl]
¡û
>C10105285
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
350512
350438
-
Met
CAT
[Ensembl]
¡û
>W11112386
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
140685
140611
-
Met
CAT
[ENA]
¡û
>C161000360
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
374592
374518
-
Met
CAT
-
¡û
>C161031531
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
335666
335592
-
Met
CAT
[Ensembl]
¡û
>C131012570
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
437030
436956
-
Met
CAT
[Ensembl]
¡û
>C131012616
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
371582
371508
-
Met
CAT
[Ensembl]
¡û
>W1610521019
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
247900
247826
-
Met
CAT
[ENA]
¡û
>W1610521024
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
249136
249210
+
Met
CAT
[ENA]
¡û
>W1610541345
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
288123
288049
-
Met
CAT
[ENA]
¡û
>W1611031991
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
885341
885415
+
Met
CAT
[ENA]
¡û
>W1611032041
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
259413
259339
-
Met
CAT
[ENA]
¡û
>W1710617269
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
247900
247826
-
Met
CAT
[ENA]
¡û
>W1710617274
JGYD01000010
Chloroflexota
Dehalococcoides mccartyi [JGYD]
249136
249210
+
Met
CAT
[ENA]
¡û
>W1710644476
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
288123
288049
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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