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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271467 (47 seq.)
>W1711272478
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39530
39606
+
Trp
CCA
[ENA]
¡û
>W1711272529
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
339607
339682
+
Trp
CCA
[ENA]
¡û
>C171019750
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1333139
1333215
+
Trp
CCA
-
¡û
>C171063621
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1203658
1203734
+
Trp
CCA
-
¡û
>C171100352
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1213065
1213141
+
Trp
CCA
-
¡û
>C171100397
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1155472
1155548
+
Trp
CCA
-
¡û
>C171100442
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1288142
1288218
+
Trp
CCA
-
¡û
>C171100488
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1253998
1254074
+
Trp
CCA
-
¡û
>C171101363
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1202434
1202510
+
Trp
CCA
-
¡û
>C171101930
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1111256
1111332
+
Trp
CCA
-
¡û
>C171101976
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1128957
1129033
+
Trp
CCA
-
¡û
>C171102517
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1180147
1180223
+
Trp
CCA
-
¡û
>C007596
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1226125
1226201
+
Trp
CCA
[Ensembl]
¡û
>C007643
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1119992
1120068
+
Trp
CCA
[Ensembl]
¡û
>C007689
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1308255
1308331
+
Trp
CCA
[Ensembl]
¡û
>W08002861
ABFQ01000016
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
2409
2336
-
Trp
CCA
[ENA]
¡û
>WENV170658989
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
31456
31532
+
Trp
CCA
[ENA]
¢þ
>C181003135
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1171899
1171975
+
Trp
CCA
-
¡û
>W09105026
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
31434
31510
+
Trp
CCA
[ENA]
¡û
>C191160378
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1200640
1200716
+
Trp
CCA
-
¡û
>W141809060
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
25760
25684
-
Trp
CCA
[ENA]
¡û
>C141007766
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1181839
1181915
+
Trp
CCA
[Ensembl]
¡û
>W1810107555
PHFC01000066
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1557
1481
-
Trp
CCA
[ENA]
¡û
>W1810107593
PHFD01000104
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
5047
4971
-
Trp
CCA
[ENA]
¡û
>W1810266166
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
337172
337248
+
Trp
CCA
[ENA]
¡û
>W1810603285
QGLC01000012
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
28770
28846
+
Trp
CCA
[ENA]
¡û
>W1810603324
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
242078
242154
+
Trp
CCA
[ENA]
¡û
>C151003209
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1164150
1164226
+
Trp
CCA
[Ensembl]
¡û
>C151015127
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1222592
1222668
+
Trp
CCA
[Ensembl]
¡û
>C151015173
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1225411
1225487
+
Trp
CCA
[Ensembl]
¡û
>C151015219
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1133156
1133232
+
Trp
CCA
[Ensembl]
¡û
>W10109952
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211806
211882
+
Trp
CCA
[ENA]
¡û
>C10105210
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1097590
1097666
+
Trp
CCA
[Ensembl]
¡û
>C10105256
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1132342
1132418
+
Trp
CCA
[Ensembl]
¡û
>W11112389
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211806
211882
+
Trp
CCA
[ENA]
¡û
>C161000331
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1187093
1187169
+
Trp
CCA
-
¡û
>C161031502
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1167232
1167308
+
Trp
CCA
[Ensembl]
¡û
>C131012541
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1232333
1232409
+
Trp
CCA
[Ensembl]
¡û
>C131012587
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1216276
1216352
+
Trp
CCA
[Ensembl]
¡û
>W1610520982
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437423
437499
+
Trp
CCA
[ENA]
¡û
>W1610521032
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33943
33867
-
Trp
CCA
[ENA]
¡û
>W1610541320
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1116824
1116900
+
Trp
CCA
[ENA]
¡û
>W1611032006
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39530
39606
+
Trp
CCA
[ENA]
¡û
>W1611032057
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
339607
339682
+
Trp
CCA
[ENA]
¡û
>W1710617232
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437423
437499
+
Trp
CCA
[ENA]
¡û
>W1710617282
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33943
33867
-
Trp
CCA
[ENA]
¡û
>W1710644451
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1116824
1116900
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK