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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653842 (25 seq.)
>W1711272524
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
40995
41069
+
Gly
CCC
[ENA]
¡û
>C171063618
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
727805
727879
+
Gly
CCC
-
¡û
>C171100439
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
753732
753806
+
Gly
CCC
-
¡û
>C171100485
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
719588
719662
+
Gly
CCC
-
¡û
>C171101360
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
729349
729423
+
Gly
CCC
-
¡û
>C171101927
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
650956
651030
+
Gly
CCC
-
¡û
>C007593
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
760830
760904
+
Gly
CCC
[Ensembl]
¡û
>C007640
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
681729
681803
+
Gly
CCC
[Ensembl]
¡û
>WENV170659013
JXWO01000036
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
10690
10764
+
Gly
CCC
[ENA]
¢þ
>C191160375
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
707108
707182
+
Gly
CCC
-
¡û
>W09105039
AAOM01000002
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
36661
36735
+
Gly
CCC
[ENA]
¡û
>W141809057
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
464185
464111
-
Gly
CCC
[ENA]
¡û
>W1810107578
PHFC01000233
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2200
2274
+
Gly
CCC
[ENA]
¡û
>W1810603265
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
505642
505716
+
Gly
CCC
[ENA]
¡û
>W1810603307
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
592220
592294
+
Gly
CCC
[ENA]
¡û
>C151015216
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
694773
694847
+
Gly
CCC
[Ensembl]
¡û
>W10109932
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
497608
497682
+
Gly
CCC
[ENA]
¡û
>C10105207
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
698856
698930
+
Gly
CCC
[Ensembl]
¡û
>W11112369
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
497608
497682
+
Gly
CCC
[ENA]
¡û
>C161000328
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
731266
731340
+
Gly
CCC
-
¡û
>C161031499
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
692573
692647
+
Gly
CCC
[Ensembl]
¡û
>C131012538
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
793953
794027
+
Gly
CCC
[Ensembl]
¡û
>W1610541317
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
645046
645120
+
Gly
CCC
[ENA]
¡û
>W1611032052
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
40995
41069
+
Gly
CCC
[ENA]
¡û
>W1710644448
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
645046
645120
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK