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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271469 (29 seq.)
>W1711272517
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
94159
94083
-
Arg
CCT
[ENA]
¡û
>C171063630
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1328202
1328278
+
Arg
CCT
-
¡û
>C171100451
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1382338
1382414
+
Arg
CCT
-
¡û
>C171100497
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1348194
1348270
+
Arg
CCT
-
¡û
>C171101372
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1291361
1291437
+
Arg
CCT
-
¡û
>C171101939
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1313780
1313856
+
Arg
CCT
-
¡û
>C171101985
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1291620
1291696
+
Arg
CCT
-
¡û
>C171102526
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1342788
1342864
+
Arg
CCT
-
¡û
>C007605
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1295758
1295834
+
Arg
CCT
[Ensembl]
¡û
>C191160387
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1376238
1376314
+
Arg
CCT
-
¡û
>W09105034
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
109603
109679
+
Arg
CCT
[ENA]
¡û
>W141809043
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
1208339
1208263
-
Arg
CCT
[ENA]
¡û
>W1810107568
PHFC01000158
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
88
164
+
Arg
CCT
[ENA]
¡û
>W1810107618
PHFD01000393
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1227
1151
-
Arg
CCT
[ENA]
¡û
>W1810603252
QGLC01000001
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
30975
31051
+
Arg
CCT
[ENA]
¡û
>W1810603294
QGLD01000001
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
4098
4174
+
Arg
CCT
[ENA]
¡û
>C151015228
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1316031
1316107
+
Arg
CCT
[Ensembl]
¡û
>W10109963
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
79480
79556
+
Arg
CCT
[ENA]
¡û
>C10105219
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1314014
1314090
+
Arg
CCT
[Ensembl]
¡û
>W11112400
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
79480
79556
+
Arg
CCT
[ENA]
¡û
>C161000340
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1404932
1405008
+
Arg
CCT
-
¡û
>C161031511
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1415856
1415932
+
Arg
CCT
[Ensembl]
¡û
>C131012550
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1385777
1385853
+
Arg
CCT
[Ensembl]
¡û
>C131012596
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1406215
1406291
+
Arg
CCT
[Ensembl]
¡û
>W1610520977
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
104742
104666
-
Arg
CCT
[ENA]
¡û
>W1610541302
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
31050
31126
+
Arg
CCT
[ENA]
¡û
>W1611032045
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
94159
94083
-
Arg
CCT
[ENA]
¡û
>W1710617227
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
104742
104666
-
Arg
CCT
[ENA]
¡û
>W1710644433
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
31050
31126
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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