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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452418 (31 seq.)
>W1711272516
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
112589
112515
-
Ala
CGC
[ENA]
¡û
>C171063629
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1309773
1309847
+
Ala
CGC
-
¡û
>C171100450
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1363906
1363980
+
Ala
CGC
-
¡û
>C171100496
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1329762
1329836
+
Ala
CGC
-
¡û
>C171101371
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1272928
1273002
+
Ala
CGC
-
¡û
>C171101938
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1295347
1295421
+
Ala
CGC
-
¡û
>C171101984
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1273189
1273263
+
Ala
CGC
-
¡û
>C171102525
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1324357
1324431
+
Ala
CGC
-
¡û
>C007604
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1276021
1276093
+
Ala
CGC
[Ensembl]
¡û
>C007651
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1330950
1331022
+
Ala
CGC
[Ensembl]
¡û
>WENV170658983
JXWO01000004
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
2610
2684
+
Ala
CGC
[ENA]
¢þ
>C191160386
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1357807
1357881
+
Ala
CGC
-
¡û
>W09105054
AAOM01000011
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
6578
6652
+
Ala
CGC
[ENA]
¡û
>W141809042
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
1226768
1226694
-
Ala
CGC
[ENA]
¡û
>W1810107543
PHFC01000010
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1086
1012
-
Ala
CGC
[ENA]
¡û
>W1810107621
PHFD01000415
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
950
1024
+
Ala
CGC
[ENA]
¡û
>W1810603251
QGLC01000001
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
12550
12624
+
Ala
CGC
[ENA]
¡û
>W1810603334
QGLD01000021
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
12920
12994
+
Ala
CGC
[ENA]
¡û
>C151015227
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1297602
1297676
+
Ala
CGC
[Ensembl]
¡û
>W10109962
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
61047
61121
+
Ala
CGC
[ENA]
¡û
>C10105218
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1295581
1295655
+
Ala
CGC
[Ensembl]
¡û
>W11112399
ADBO01000003
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
61047
61121
+
Ala
CGC
[ENA]
¡û
>C161000339
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1386498
1386572
+
Ala
CGC
-
¡û
>C161031510
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1397427
1397501
+
Ala
CGC
[Ensembl]
¡û
>C131012549
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1367343
1367417
+
Ala
CGC
[Ensembl]
¡û
>C131012595
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1387783
1387857
+
Ala
CGC
[Ensembl]
¡û
>W1610520976
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
121984
121910
-
Ala
CGC
[ENA]
¡û
>W1610541301
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
12616
12690
+
Ala
CGC
[ENA]
¡û
>W1611032044
LZFK01000007
Chloroflexota
Dehalococcoides mccartyi [LZFK]
112589
112515
-
Ala
CGC
[ENA]
¡û
>W1710617226
JGVX01000001
Chloroflexota
Dehalococcoides mccartyi [JGVX]
121984
121910
-
Ala
CGC
[ENA]
¡û
>W1710644432
JSWM01000006
Chloroflexota
Dehalococcoides mccartyi [JSWM]
12616
12690
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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