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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452425 (46 seq.)
>W1711272457
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
471759
471832
+
Lys
CTT
[ENA]
¡û
>W1711272526
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
7063
6990
-
Lys
CTT
[ENA]
¡û
>C171019769
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
798225
798152
-
Lys
CTT
-
¡û
>C171063644
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
693874
693801
-
Lys
CTT
-
¡û
>C171100374
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
677366
677293
-
Lys
CTT
-
¡û
>C171100419
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
635044
634971
-
Lys
CTT
-
¡û
>C171100465
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
719801
719728
-
Lys
CTT
-
¡û
>C171100511
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
685657
685584
-
Lys
CTT
-
¡û
>C171101386
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
695418
695345
-
Lys
CTT
-
¡û
>C171101953
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
617025
616952
-
Lys
CTT
-
¡û
>C171101999
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
618835
618762
-
Lys
CTT
-
¡û
>C171102540
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
669823
669750
-
Lys
CTT
-
¡û
>C007619
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
726898
726826
-
Lys
CTT
[Ensembl]
¡û
>C007666
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
647798
647726
-
Lys
CTT
[Ensembl]
¡û
>C007712
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
748083
748011
-
Lys
CTT
[Ensembl]
¡û
>W08002834
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
119428
119501
+
Lys
CTT
[ENA]
¡û
>WENV170659008
JXWO01000028
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
47073
47000
-
Lys
CTT
[ENA]
¢þ
>C181003158
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
659369
659296
-
Lys
CTT
-
¡û
>C191160401
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
673175
673102
-
Lys
CTT
-
¡û
>W09105043
AAOM01000002
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
2729
2656
-
Lys
CTT
[ENA]
¡û
>W141809033
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
498116
498189
+
Lys
CTT
[ENA]
¡û
>C141007789
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
680114
680041
-
Lys
CTT
[Ensembl]
¡û
>W1810107576
PHFC01000200
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
4868
4795
-
Lys
CTT
[ENA]
¡û
>W1810266201
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
411357
411284
-
Lys
CTT
[ENA]
¡û
>W1810603272
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
471733
471660
-
Lys
CTT
[ENA]
¡û
>W1810603309
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
558318
558245
-
Lys
CTT
[ENA]
¡û
>C151003232
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
660333
660260
-
Lys
CTT
[Ensembl]
¡û
>C151015150
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
699506
699433
-
Lys
CTT
[Ensembl]
¡û
>C151015196
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
740766
740693
-
Lys
CTT
[Ensembl]
¡û
>C151015242
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
660842
660769
-
Lys
CTT
[Ensembl]
¡û
>W10109943
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
463677
463604
-
Lys
CTT
[ENA]
¡û
>C10105233
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
664926
664853
-
Lys
CTT
[Ensembl]
¡û
>C10105279
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
672084
672011
-
Lys
CTT
[Ensembl]
¡û
>W11112380
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
463677
463604
-
Lys
CTT
[ENA]
¡û
>C161000354
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
697335
697262
-
Lys
CTT
-
¡û
>C161031525
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
658642
658569
-
Lys
CTT
[Ensembl]
¡û
>C131012564
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
760022
759949
-
Lys
CTT
[Ensembl]
¡û
>C131012610
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
694563
694490
-
Lys
CTT
[Ensembl]
¡û
>W1610521013
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
570450
570377
-
Lys
CTT
[ENA]
¡û
>W1610521045
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
60367
60440
+
Lys
CTT
[ENA]
¡û
>W1610541339
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
611115
611042
-
Lys
CTT
[ENA]
¡û
>W1611031985
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
471759
471832
+
Lys
CTT
[ENA]
¡û
>W1611032054
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
7063
6990
-
Lys
CTT
[ENA]
¡û
>W1710617263
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
570450
570377
-
Lys
CTT
[ENA]
¡û
>W1710617295
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
60367
60440
+
Lys
CTT
[ENA]
¡û
>W1710644470
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
611115
611042
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK