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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112373 (45 seq.)
>W1711272479
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39612
39698
+
Leu
GAG
[ENA]
¡û
>C171019751
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1333221
1333307
+
Leu
GAG
-
¡û
>C171063622
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1203740
1203826
+
Leu
GAG
-
¡û
>C171100353
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1213147
1213233
+
Leu
GAG
-
¡û
>C171100398
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1155554
1155640
+
Leu
GAG
-
¡û
>C171100443
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1288224
1288310
+
Leu
GAG
-
¡û
>C171100489
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1254080
1254166
+
Leu
GAG
-
¡û
>C171101364
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1202516
1202602
+
Leu
GAG
-
¡û
>C171101931
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1111338
1111424
+
Leu
GAG
-
¡û
>C171101977
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1129039
1129125
+
Leu
GAG
-
¡û
>C171102518
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1180229
1180315
+
Leu
GAG
-
¡û
>C007597
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1226207
1226293
+
Leu
GAG
[Ensembl]
¡û
>C007644
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1120074
1120160
+
Leu
GAG
[Ensembl]
¡û
>C007690
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1308337
1308423
+
Leu
GAG
[Ensembl]
¡û
>W08002862
ABFQ01000016
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
2327
2244
-
Leu
GAG
[ENA]
¡û
>WENV170658990
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
31538
31624
+
Leu
GAG
[ENA]
¢þ
>C181003136
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1171981
1172067
+
Leu
GAG
-
¡û
>C191160379
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1200722
1200808
+
Leu
GAG
-
¡û
>W09105027
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
31516
31602
+
Leu
GAG
[ENA]
¡û
>W141809061
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
25678
25592
-
Leu
GAG
[ENA]
¡û
>C141007767
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1181921
1182007
+
Leu
GAG
[Ensembl]
¡û
>W1810107556
PHFC01000066
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1475
1389
-
Leu
GAG
[ENA]
¡û
>W1810107594
PHFD01000104
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
4965
4879
-
Leu
GAG
[ENA]
¡û
>W1810266167
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
337254
337340
+
Leu
GAG
[ENA]
¡û
>W1810603286
QGLC01000012
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
28852
28938
+
Leu
GAG
[ENA]
¡û
>W1810603325
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
242160
242246
+
Leu
GAG
[ENA]
¡û
>C151003210
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1164232
1164318
+
Leu
GAG
[Ensembl]
¡û
>C151015128
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1222674
1222760
+
Leu
GAG
[Ensembl]
¡û
>C151015174
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1225493
1225579
+
Leu
GAG
[Ensembl]
¡û
>C151015220
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1133238
1133324
+
Leu
GAG
[Ensembl]
¡û
>W10109953
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211888
211974
+
Leu
GAG
[ENA]
¡û
>C10105211
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1097672
1097758
+
Leu
GAG
[Ensembl]
¡û
>C10105257
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1132424
1132510
+
Leu
GAG
[Ensembl]
¡û
>W11112390
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
211888
211974
+
Leu
GAG
[ENA]
¡û
>C161000332
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1187175
1187261
+
Leu
GAG
-
¡û
>C161031503
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1167314
1167400
+
Leu
GAG
[Ensembl]
¡û
>C131012542
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1232415
1232501
+
Leu
GAG
[Ensembl]
¡û
>C131012588
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1216358
1216444
+
Leu
GAG
[Ensembl]
¡û
>W1610520983
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437505
437591
+
Leu
GAG
[ENA]
¡û
>W1610521033
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33861
33775
-
Leu
GAG
[ENA]
¡û
>W1610541321
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1116906
1116992
+
Leu
GAG
[ENA]
¡û
>W1611032007
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39612
39698
+
Leu
GAG
[ENA]
¡û
>W1710617233
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437505
437591
+
Leu
GAG
[ENA]
¡û
>W1710617283
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33861
33775
-
Leu
GAG
[ENA]
¡û
>W1710644452
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1116906
1116992
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK