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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274932 (28 seq.)
>W1711272493
LZFK01000002
Chloroflexota
Dehalococcoides mccartyi [LZFK]
48589
48513
-
Ile
GAT
[ENA]
¡û
>C171063637
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
877686
877610
-
Ile
GAT
-
¡û
>C171100458
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
929654
929578
-
Ile
GAT
-
¡û
>C171100504
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
895510
895434
-
Ile
GAT
-
¡û
>C171101379
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
884876
884800
-
Ile
GAT
-
¡û
>C171101946
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
793456
793380
-
Ile
GAT
-
¡û
>C171101992
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
778975
778899
-
Ile
GAT
-
¡û
>C171102533
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
829963
829887
-
Ile
GAT
-
¡û
>C007612
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
891944
891868
-
Ile
GAT
[Ensembl]
¡û
>C007659
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
803229
803153
-
Ile
GAT
[Ensembl]
¡û
>C191160394
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
835543
835467
-
Ile
GAT
-
¡û
>W09105057
AAOM01000015
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
16872
16796
-
Ile
GAT
[ENA]
¡û
>W141809026
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
342686
342762
+
Ile
GAT
[ENA]
¡û
>W1810107562
PHFC01000118
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1831
1755
-
Ile
GAT
[ENA]
¡û
>W1810603282
QGLC01000010
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
7061
6985
-
Ile
GAT
[ENA]
¡û
>W1810603322
QGLD01000010
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
12409
12333
-
Ile
GAT
[ENA]
¡û
>W10109936
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
619112
619036
-
Ile
GAT
[ENA]
¡û
>C10105226
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
820361
820285
-
Ile
GAT
[Ensembl]
¡û
>W11112373
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
619112
619036
-
Ile
GAT
[ENA]
¡û
>C161000347
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
852747
852671
-
Ile
GAT
-
¡û
>C161031518
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
850306
850230
-
Ile
GAT
[Ensembl]
¡û
>C131012557
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
915460
915384
-
Ile
GAT
[Ensembl]
¡û
>C131012603
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
894231
894155
-
Ile
GAT
[Ensembl]
¡û
>W1610520994
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
104583
104507
-
Ile
GAT
[ENA]
¡û
>W1610541332
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
766553
766477
-
Ile
GAT
[ENA]
¡û
>W1611032021
LZFK01000002
Chloroflexota
Dehalococcoides mccartyi [LZFK]
48589
48513
-
Ile
GAT
[ENA]
¡û
>W1710617244
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
104583
104507
-
Ile
GAT
[ENA]
¡û
>W1710644463
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
766553
766477
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK