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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653837 (47 seq.)
>W1711272481
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39824
39898
+
Cys
GCA
[ENA]
¡û
>W1711272496
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
41699
41625
-
Cys
GCA
[ENA]
¡û
>C171019753
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1333433
1333507
+
Cys
GCA
-
¡û
>C171063624
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1203952
1204026
+
Cys
GCA
-
¡û
>C171100355
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1213359
1213433
+
Cys
GCA
-
¡û
>C171100400
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1155766
1155840
+
Cys
GCA
-
¡û
>C171100445
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1288436
1288510
+
Cys
GCA
-
¡û
>C171100491
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1254292
1254366
+
Cys
GCA
-
¡û
>C171101366
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1202728
1202802
+
Cys
GCA
-
¡û
>C171101933
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1111550
1111624
+
Cys
GCA
-
¡û
>C171101979
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1129251
1129325
+
Cys
GCA
-
¡û
>C171102520
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1180441
1180515
+
Cys
GCA
-
¡û
>C007599
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1226419
1226493
+
Cys
GCA
[Ensembl]
¡û
>C007646
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1120286
1120360
+
Cys
GCA
[Ensembl]
¡û
>C007692
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1308549
1308623
+
Cys
GCA
[Ensembl]
¡û
>W08002864
ABFQ01000016
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
2115
2044
-
Cys
GCA
[ENA]
¡û
>WENV170658992
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
31750
31824
+
Cys
GCA
[ENA]
¢þ
>C181003138
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1172193
1172267
+
Cys
GCA
-
¡û
>C191160381
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1200934
1201008
+
Cys
GCA
-
¡û
>W09105029
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
31728
31802
+
Cys
GCA
[ENA]
¡û
>W141809063
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
25466
25392
-
Cys
GCA
[ENA]
¡û
>C141007769
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1182133
1182207
+
Cys
GCA
[Ensembl]
¡û
>W1810107558
PHFC01000066
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1263
1189
-
Cys
GCA
[ENA]
¡û
>W1810107596
PHFD01000104
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
4753
4679
-
Cys
GCA
[ENA]
¡û
>W1810266169
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
337466
337540
+
Cys
GCA
[ENA]
¡û
>W1810603288
QGLC01000012
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
29064
29138
+
Cys
GCA
[ENA]
¡û
>W1810603327
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
242372
242446
+
Cys
GCA
[ENA]
¡û
>C151003212
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1164444
1164518
+
Cys
GCA
[Ensembl]
¡û
>C151015130
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1222886
1222960
+
Cys
GCA
[Ensembl]
¡û
>C151015176
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1225705
1225779
+
Cys
GCA
[Ensembl]
¡û
>C151015222
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1133450
1133524
+
Cys
GCA
[Ensembl]
¡û
>W10109955
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
212100
212174
+
Cys
GCA
[ENA]
¡û
>C10105213
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1097884
1097958
+
Cys
GCA
[Ensembl]
¡û
>C10105259
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1132636
1132710
+
Cys
GCA
[Ensembl]
¡û
>W11112392
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
212100
212174
+
Cys
GCA
[ENA]
¡û
>C161000334
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1187387
1187461
+
Cys
GCA
-
¡û
>C161031505
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1167526
1167600
+
Cys
GCA
[Ensembl]
¡û
>C131012544
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1232627
1232701
+
Cys
GCA
[Ensembl]
¡û
>C131012590
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1216570
1216644
+
Cys
GCA
[Ensembl]
¡û
>W1610520985
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437717
437791
+
Cys
GCA
[ENA]
¡û
>W1610521035
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33649
33575
-
Cys
GCA
[ENA]
¡û
>W1610541323
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1117118
1117192
+
Cys
GCA
[ENA]
¡û
>W1611032009
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
39824
39898
+
Cys
GCA
[ENA]
¡û
>W1611032024
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
41699
41625
-
Cys
GCA
[ENA]
¡û
>W1710617235
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
437717
437791
+
Cys
GCA
[ENA]
¡û
>W1710617285
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
33649
33575
-
Cys
GCA
[ENA]
¡û
>W1710644454
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1117118
1117192
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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