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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271473 (53 seq.)
>W1711272470
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
562316
562240
-
Pro
GGG
[ENA]
¡û
>W1711272507
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
535416
535492
+
Pro
GGG
[ENA]
¡û
>W1711408770
MGNH01000006
Chloroflexota
Chloroflexi bacterium RBG_16_48_7 [MGNH]
1739
1663
-
Pro
GGG
[ENA]
¡û
>W1711584117
MNYD01000014
Chloroflexota
Dehalococcoidia bacterium CG2_30_46_19 [MNYD]
3461
3388
-
Pro
GGG
[ENA]
¡û
>W1711584168
MNYE01000094
Chloroflexota
Dehalococcoidia bacterium CG2_30_46_9 [MNYE]
13869
13793
-
Pro
GGG
[ENA]
¡û
>C171019742
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
706659
706735
+
Pro
GGG
-
¡û
>C171063613
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
646880
646956
+
Pro
GGG
-
¡û
>C171100344
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
630471
630547
+
Pro
GGG
-
¡û
>C171100389
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
588149
588225
+
Pro
GGG
-
¡û
>C171100434
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
672804
672880
+
Pro
GGG
-
¡û
>C171100480
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
638660
638736
+
Pro
GGG
-
¡û
>C171101355
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
648421
648497
+
Pro
GGG
-
¡û
>C171101922
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
570033
570109
+
Pro
GGG
-
¡û
>C171101968
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
554874
554950
+
Pro
GGG
-
¡û
>C171102509
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
605862
605938
+
Pro
GGG
-
¡û
>C007588
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
679908
679984
+
Pro
GGG
[Ensembl]
¡û
>C007635
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
600806
600882
+
Pro
GGG
[Ensembl]
¡û
>C007681
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
701192
701268
+
Pro
GGG
[Ensembl]
¡û
>WENV181410126
OGCI01001463
[OGCI] hot springs metagenome; Hot spring water
17609
17682
+
Pro
GGG
[ENA]
¢þ
>W08002875
ABFQ01000028
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
8979
9055
+
Pro
GGG
[ENA]
¡û
>C181003127
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
571049
571125
+
Pro
GGG
-
¡û
>C191160370
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
626180
626256
+
Pro
GGG
-
¡û
>W09105048
AAOM01000008
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
32143
32067
-
Pro
GGG
[ENA]
¡û
>W141809052
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
545110
545034
-
Pro
GGG
[ENA]
¡û
>C141007758
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
596391
596467
+
Pro
GGG
[Ensembl]
¡û
>W1810107563
PHFC01000122
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
121
197
+
Pro
GGG
[ENA]
¡û
>W1810107604
PHFD01000119
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
805
729
-
Pro
GGG
[ENA]
¡û
>W1810266189
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
364462
364538
+
Pro
GGG
[ENA]
¡û
>W1810603261
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
424760
424836
+
Pro
GGG
[ENA]
¡û
>W1810603303
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
511361
511437
+
Pro
GGG
[ENA]
¡û
>C151003201
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
613417
613493
+
Pro
GGG
[Ensembl]
¡û
>C151015118
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
652582
652658
+
Pro
GGG
[Ensembl]
¡û
>C151015165
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
622835
622911
+
Pro
GGG
[Ensembl]
¡û
>C151015211
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
571222
571298
+
Pro
GGG
[Ensembl]
¡û
>SRA1034403
SRR035089.82825
454 Sequencing (SRP001810)
385
309
-
Pro
GGG
[SRA]
>SRA1049332
SRR035095.58194
454 Sequencing (SRP001816)
350
274
-
Pro
GGG
[SRA]
>SRA1049458
SRR035095.80917
454 Sequencing (SRP001816)
350
274
-
Pro
GGG
[SRA]
>W10109927
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
416686
416762
+
Pro
GGG
[ENA]
¡û
>C10105202
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
617934
618010
+
Pro
GGG
[Ensembl]
¡û
>C10105248
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
625153
625229
+
Pro
GGG
[Ensembl]
¡û
>W11112364
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
416686
416762
+
Pro
GGG
[ENA]
¡û
>C161000323
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
650338
650414
+
Pro
GGG
-
¡û
>C161031494
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
611648
611724
+
Pro
GGG
[Ensembl]
¡û
>C131012533
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
713028
713104
+
Pro
GGG
[Ensembl]
¡û
>C131012579
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
647566
647642
+
Pro
GGG
[Ensembl]
¡û
>W1610521007
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
523453
523529
+
Pro
GGG
[ENA]
¡û
>W1610521050
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
107263
107187
-
Pro
GGG
[ENA]
¡û
>W1610541312
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
564120
564196
+
Pro
GGG
[ENA]
¡û
>W1611031998
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
562316
562240
-
Pro
GGG
[ENA]
¡û
>W1611032035
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
535416
535492
+
Pro
GGG
[ENA]
¡û
>W1710617257
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
523453
523529
+
Pro
GGG
[ENA]
¡û
>W1710617300
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
107263
107187
-
Pro
GGG
[ENA]
¡û
>W1710644443
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
564120
564196
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK