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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271474 (47 seq.)
>W1711272476
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
287769
287693
-
Asp
GTC
[ENA]
¡û
>W1711272519
LZFK01000008
Chloroflexota
Dehalococcoides mccartyi [LZFK]
21300
21376
+
Asp
GTC
[ENA]
¡û
>C171019748
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1003352
1003428
+
Asp
GTC
-
¡û
>C171063619
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
900720
900796
+
Asp
GTC
-
¡û
>C171100350
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
870455
870531
+
Asp
GTC
-
¡û
>C171100395
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
813984
814060
+
Asp
GTC
-
¡û
>C171100440
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
952690
952766
+
Asp
GTC
-
¡û
>C171100486
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
918546
918622
+
Asp
GTC
-
¡û
>C171101361
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
907912
907988
+
Asp
GTC
-
¡û
>C171101928
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
816492
816568
+
Asp
GTC
-
¡û
>C171101974
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
802010
802086
+
Asp
GTC
-
¡û
>C171102515
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
852998
853074
+
Asp
GTC
-
¡û
>C007594
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
914980
915056
+
Asp
GTC
[Ensembl]
¡û
>C007641
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
826263
826339
+
Asp
GTC
[Ensembl]
¡û
>C007687
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
950330
950406
+
Asp
GTC
[Ensembl]
¡û
>W08002849
ABFQ01000010
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
10136
10212
+
Asp
GTC
[ENA]
¡û
>WENV170658984
JXWO01000006
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
22165
22241
+
Asp
GTC
[ENA]
¢þ
>C181003133
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
846007
846083
+
Asp
GTC
-
¡û
>C191160376
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
858577
858653
+
Asp
GTC
-
¡û
>W09105046
AAOM01000006
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
9533
9609
+
Asp
GTC
[ENA]
¡û
>W141809058
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
319652
319576
-
Asp
GTC
[ENA]
¡û
>C141007764
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
866799
866875
+
Asp
GTC
[Ensembl]
¡û
>W1810107585
PHFC01000349
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
913
989
+
Asp
GTC
[ENA]
¡û
>W1810107605
PHFD01000121
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
3696
3772
+
Asp
GTC
[ENA]
¡û
>W1810266164
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
35281
35357
+
Asp
GTC
[ENA]
¡û
>W1810603279
QGLC01000010
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
30077
30153
+
Asp
GTC
[ENA]
¡û
>W1810603319
QGLD01000010
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
35433
35509
+
Asp
GTC
[ENA]
¡û
>C151003207
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
850448
850524
+
Asp
GTC
[Ensembl]
¡û
>C151015124
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
881376
881452
+
Asp
GTC
[Ensembl]
¡û
>C151015171
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
914186
914262
+
Asp
GTC
[Ensembl]
¡û
>C151015217
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
839310
839386
+
Asp
GTC
[Ensembl]
¡û
>W10109933
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
642148
642224
+
Asp
GTC
[ENA]
¡û
>C10105208
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
843397
843473
+
Asp
GTC
[Ensembl]
¡û
>C10105254
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
850477
850553
+
Asp
GTC
[Ensembl]
¡û
>W11112370
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
642148
642224
+
Asp
GTC
[ENA]
¡û
>C161000329
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
875783
875859
+
Asp
GTC
-
¡û
>C161031500
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
873340
873416
+
Asp
GTC
[Ensembl]
¡û
>C131012539
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
938495
938571
+
Asp
GTC
[Ensembl]
¡û
>C131012585
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
920508
920584
+
Asp
GTC
[Ensembl]
¡û
>W1610520980
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
130861
130937
+
Asp
GTC
[ENA]
¡û
>W1610521044
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
122524
122448
-
Asp
GTC
[ENA]
¡û
>W1610541318
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
789588
789664
+
Asp
GTC
[ENA]
¡û
>W1611032004
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
287769
287693
-
Asp
GTC
[ENA]
¡û
>W1611032047
LZFK01000008
Chloroflexota
Dehalococcoides mccartyi [LZFK]
21300
21376
+
Asp
GTC
[ENA]
¡û
>W1710617230
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
130861
130937
+
Asp
GTC
[ENA]
¡û
>W1710617294
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
122524
122448
-
Asp
GTC
[ENA]
¡û
>W1710644449
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
789588
789664
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK