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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271468 (46 seq.)
>W1711272485
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
56538
56614
+
Val
TAC
[ENA]
¡û
>W1711272500
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
24644
24568
-
Val
TAC
[ENA]
¡û
>C171019757
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1350160
1350236
+
Val
TAC
-
¡û
>C171063628
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1221007
1221083
+
Val
TAC
-
¡û
>C171100359
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1230071
1230147
+
Val
TAC
-
¡û
>C171100404
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1172478
1172554
+
Val
TAC
-
¡û
>C171100449
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1305496
1305572
+
Val
TAC
-
¡û
>C171100495
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1271352
1271428
+
Val
TAC
-
¡û
>C171101370
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1219786
1219862
+
Val
TAC
-
¡û
>C171101937
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
1128610
1128686
+
Val
TAC
-
¡û
>C171101983
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1146311
1146387
+
Val
TAC
-
¡û
>C171102524
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1197501
1197577
+
Val
TAC
-
¡û
>C007603
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1243479
1243555
+
Val
TAC
[Ensembl]
¡û
>C007650
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1137342
1137418
+
Val
TAC
[Ensembl]
¡û
>C007696
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1325383
1325459
+
Val
TAC
[Ensembl]
¡û
>W08002859
ABFQ01000014
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
14421
14497
+
Val
TAC
[ENA]
¡û
>WENV170658996
JXWO01000020
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
48915
48991
+
Val
TAC
[ENA]
¢þ
>W09105033
AAOM01000001
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
48788
48864
+
Val
TAC
[ENA]
¡û
>C181003142
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1188904
1188980
+
Val
TAC
-
¡û
>C191160385
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1217989
1218065
+
Val
TAC
-
¡û
>W141809067
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
8411
8335
-
Val
TAC
[ENA]
¡û
>C141007773
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1198860
1198936
+
Val
TAC
[Ensembl]
¡û
>W1810107573
PHFC01000183
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1490
1566
+
Val
TAC
[ENA]
¡û
>W1810266173
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
354177
354253
+
Val
TAC
[ENA]
¡û
>W1810603291
QGLC01000013
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
11586
11662
+
Val
TAC
[ENA]
¡û
>W1810603330
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
259422
259498
+
Val
TAC
[ENA]
¡û
>C151003216
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1181173
1181249
+
Val
TAC
[Ensembl]
¡û
>C151015134
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1239613
1239689
+
Val
TAC
[Ensembl]
¡û
>C151015180
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1242418
1242494
+
Val
TAC
[Ensembl]
¡û
>C151015226
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1150505
1150581
+
Val
TAC
[Ensembl]
¡û
>W10109959
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229157
229233
+
Val
TAC
[ENA]
¡û
>C10105217
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1114941
1115017
+
Val
TAC
[Ensembl]
¡û
>C10105263
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1149363
1149439
+
Val
TAC
[Ensembl]
¡û
>W11112396
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
229157
229233
+
Val
TAC
[ENA]
¡û
>C161000338
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1204444
1204520
+
Val
TAC
-
¡û
>C161031509
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1184581
1184657
+
Val
TAC
[Ensembl]
¡û
>C131012548
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1249685
1249761
+
Val
TAC
[Ensembl]
¡û
>C131012594
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1233626
1233702
+
Val
TAC
[Ensembl]
¡û
>W1610520989
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
454773
454849
+
Val
TAC
[ENA]
¡û
>W1610521039
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
16936
16860
-
Val
TAC
[ENA]
¡û
>W1610541327
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1134176
1134252
+
Val
TAC
[ENA]
¡û
>W1611032013
LZFJ01000007
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
56538
56614
+
Val
TAC
[ENA]
¡û
>W1611032028
LZFK01000004
Chloroflexota
Dehalococcoides mccartyi [LZFK]
24644
24568
-
Val
TAC
[ENA]
¡û
>W1710617239
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
454773
454849
+
Val
TAC
[ENA]
¡û
>W1710617289
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
16936
16860
-
Val
TAC
[ENA]
¡û
>W1710644458
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1134176
1134252
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK