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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271472 (26 seq.)
>W1711272506
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
523246
523322
+
Arg
TCT
[ENA]
¡û
>C171063612
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
634711
634787
+
Arg
TCT
-
¡û
>C171101354
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
636251
636327
+
Arg
TCT
-
¡û
>C171101921
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
557862
557938
+
Arg
TCT
-
¡û
>C007587
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
667738
667814
+
Arg
TCT
[Ensembl]
¡û
>C007634
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
588635
588711
+
Arg
TCT
[Ensembl]
¡û
>WENV170659017
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
39230
39306
+
Arg
TCT
[ENA]
¢þ
>C191160369
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
614011
614087
+
Arg
TCT
-
¡û
>W09105061
AAOM01000020
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
11450
11526
+
Arg
TCT
[ENA]
¡û
>W141809051
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
557279
557203
-
Arg
TCT
[ENA]
¡û
>W1810107579
PHFC01000234
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
5947
6023
+
Arg
TCT
[ENA]
¡û
>W1810107599
PHFD01000106
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
4428
4504
+
Arg
TCT
[ENA]
¡û
>W1810603260
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
412593
412669
+
Arg
TCT
[ENA]
¡û
>W1810603302
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
499200
499276
+
Arg
TCT
[ENA]
¡û
>C151015210
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
559053
559129
+
Arg
TCT
[Ensembl]
¡û
>W10109926
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
404515
404591
+
Arg
TCT
[ENA]
¡û
>C10105201
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
605763
605839
+
Arg
TCT
[Ensembl]
¡û
>W11112363
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
404515
404591
+
Arg
TCT
[ENA]
¡û
>C161031493
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
599479
599555
+
Arg
TCT
[Ensembl]
¡û
>C131012532
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
700858
700934
+
Arg
TCT
[Ensembl]
¡û
>C131012578
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
635396
635472
+
Arg
TCT
[Ensembl]
¡û
>W1610521006
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
511283
511359
+
Arg
TCT
[ENA]
¡û
>W1610541311
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
551950
552026
+
Arg
TCT
[ENA]
¡û
>W1611032034
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
523246
523322
+
Arg
TCT
[ENA]
¡û
>W1710617256
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
511283
511359
+
Arg
TCT
[ENA]
¡û
>W1710644442
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
551950
552026
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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