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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452426 (49 seq.)
>W1711272486
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
2
77
+
Ala
TGC
[ENA]
¡û
>W1711272514
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
174171
174096
-
Ala
TGC
[ENA]
¡û
>C171019776
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
344018
343943
-
Ala
TGC
-
¡û
>C171063651
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
285532
285457
-
Ala
TGC
-
¡û
>C171100381
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
251543
251468
-
Ala
TGC
-
¡û
>C171100426
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
223301
223226
-
Ala
TGC
-
¡û
>C171100472
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
311569
311494
-
Ala
TGC
-
¡û
>C171100518
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
277425
277350
-
Ala
TGC
-
¡û
>C171101393
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
287191
287116
-
Ala
TGC
-
¡û
>C171101960
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
208986
208911
-
Ala
TGC
-
¡û
>C171102006
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
193520
193445
-
Ala
TGC
-
¡û
>C171102547
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
244535
244460
-
Ala
TGC
-
¡û
>C007626
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
312251
312176
-
Ala
TGC
[Ensembl]
¡û
>C007673
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
231274
231199
-
Ala
TGC
[Ensembl]
¡û
>C007718
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
309039
308964
-
Ala
TGC
[Ensembl]
¡û
>W08002843
ABFQ01000005
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
9869
9944
+
Ala
TGC
[ENA]
¡û
>W08002844
ABFQ01000005
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
62507
62582
+
Ala
TGC
[ENA]
¡û
>W08002845
ABFQ01000005
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
64461
64536
+
Ala
TGC
[ENA]
¡û
>WENV170658988
JXWO01000014
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
27910
27985
+
Ala
TGC
[ENA]
¢þ
>C181003165
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
206690
206615
-
Ala
TGC
-
¡û
>C191160408
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
264845
264770
-
Ala
TGC
-
¡û
>W09105059
AAOM01000017
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
17755
17830
+
Ala
TGC
[ENA]
¡û
>W141809040
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
906393
906468
+
Ala
TGC
[ENA]
¡û
>C141007796
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
233711
233636
-
Ala
TGC
[Ensembl]
¡û
>W1810107584
PHFC01000298
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
1766
1841
+
Ala
TGC
[ENA]
¡û
>W1810107607
PHFD01000162
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
4198
4273
+
Ala
TGC
[ENA]
¡û
>W1810266208
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
385
310
-
Ala
TGC
[ENA]
¡û
>W1810603278
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
57203
57128
-
Ala
TGC
[ENA]
¡û
>W1810603314
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
143864
143789
-
Ala
TGC
[ENA]
¡û
>C151003239
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
247217
247142
-
Ala
TGC
[Ensembl]
¡û
>C151015157
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
289941
289866
-
Ala
TGC
[Ensembl]
¡û
>C151015203
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
260516
260441
-
Ala
TGC
[Ensembl]
¡û
>C151015249
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
209877
209802
-
Ala
TGC
[Ensembl]
¡û
>W10109950
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
55452
55377
-
Ala
TGC
[ENA]
¡û
>C10105240
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
256700
256625
-
Ala
TGC
[Ensembl]
¡û
>C10105286
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
259135
259060
-
Ala
TGC
[Ensembl]
¡û
>W11112387
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
55452
55377
-
Ala
TGC
[ENA]
¡û
>C161000361
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
282925
282850
-
Ala
TGC
-
¡û
>C161031532
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
250309
250234
-
Ala
TGC
[Ensembl]
¡û
>C131012571
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
345239
345164
-
Ala
TGC
[Ensembl]
¡û
>C131012617
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
286347
286272
-
Ala
TGC
[Ensembl]
¡û
>W1610521020
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
162649
162574
-
Ala
TGC
[ENA]
¡û
>W1610521029
JGYD01000012
Chloroflexota
Dehalococcoides mccartyi [JGYD]
2716
2641
-
Ala
TGC
[ENA]
¡û
>W1610541346
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
196331
196256
-
Ala
TGC
[ENA]
¡û
>W1611032014
LZFJ01000008
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
2
77
+
Ala
TGC
[ENA]
¡û
>W1611032042
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
174171
174096
-
Ala
TGC
[ENA]
¡û
>W1710617270
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
162649
162574
-
Ala
TGC
[ENA]
¡û
>W1710617279
JGYD01000012
Chloroflexota
Dehalococcoides mccartyi [JGYD]
2716
2641
-
Ala
TGC
[ENA]
¡û
>W1710644477
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
196331
196256
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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