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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Chloroflexi
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452424 (29 seq.)
>W1711272525
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
62355
62280
-
Lys
TTT
[ENA]
¡û
>C171100464
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
781020
780945
-
Lys
TTT
-
¡û
>C171100510
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
746876
746801
-
Lys
TTT
-
¡û
>C171101385
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
756637
756562
-
Lys
TTT
-
¡û
>C171101952
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
672320
672245
-
Lys
TTT
-
¡û
>C171101998
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
678841
678766
-
Lys
TTT
-
¡û
>C171102539
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
729829
729754
-
Lys
TTT
-
¡û
>C007618
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
782195
782120
-
Lys
TTT
[Ensembl]
¡û
>C007665
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
703093
703018
-
Lys
TTT
[Ensembl]
¡û
>C191160400
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
728472
728397
-
Lys
TTT
-
¡û
>W09105042
AAOM01000002
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
58026
57951
-
Lys
TTT
[ENA]
¡û
>W141809032
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
442821
442896
+
Lys
TTT
[ENA]
¡û
>W1810107542
PHFC01000006
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
3358
3433
+
Lys
TTT
[ENA]
¡û
>W1810107613
PHFD01000295
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
1311
1386
+
Lys
TTT
[ENA]
¡û
>W1810603271
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
526996
526921
-
Lys
TTT
[ENA]
¡û
>W1810603308
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
613561
613486
-
Lys
TTT
[ENA]
¡û
>C151015241
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
716137
716062
-
Lys
TTT
[Ensembl]
¡û
>W10109942
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
518973
518898
-
Lys
TTT
[ENA]
¡û
>C10105232
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
720221
720146
-
Lys
TTT
[Ensembl]
¡û
>W11112379
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
518973
518898
-
Lys
TTT
[ENA]
¡û
>C161000353
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
752631
752556
-
Lys
TTT
-
¡û
>C161031524
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
713937
713862
-
Lys
TTT
[Ensembl]
¡û
>C131012563
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
815319
815244
-
Lys
TTT
[Ensembl]
¡û
>C131012609
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
755781
755706
-
Lys
TTT
[Ensembl]
¡û
>W1610521000
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
4450
4375
-
Lys
TTT
[ENA]
¡û
>W1610541338
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
666412
666337
-
Lys
TTT
[ENA]
¡û
>W1611032053
LZFK01000014
Chloroflexota
Dehalococcoides mccartyi [LZFK]
62355
62280
-
Lys
TTT
[ENA]
¡û
>W1710617250
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
4450
4375
-
Lys
TTT
[ENA]
¡û
>W1710644469
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
666412
666337
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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