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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Deinococcus-Thermus
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271655 (26 seq.)
>W1710875565
LMOM01000032
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
371585
371661
+
Met
CAT
[ENA]
¡û
>W1711743920
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
2346489
2346565
+
Met
CAT
[ENA]
¡û
>W1712080683
NHMK01000030
Deinococcota
Deinococcus indicus [NHMK]
138390
138314
-
Met
CAT
[ENA]
¡û
>PL171000369
CP002192
Deinococcus-Thermus
Deinococcus gobiensis I-0 plasmid:P1
129819
129743
-
Met
CAT
[ENA]
¡û
>W131178657
ARLS01000046
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
93393
93469
+
Met
CAT
[ENA]
¡û
>W131213893
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1851191
1851267
+
Met
CAT
[ENA]
¡û
>W131237101
AUMV01000007
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
7005
6929
-
Met
CAT
[ENA]
¡û
>WENV183636491
OOKD01012047
[OOKD] human gut metagenome; Skin biopsy
799
723
-
Met
CAT
[ENA]
¢þ
>C181134286
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
470906
470982
+
Met
CAT
-
¡û
>C181185084
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
1343725
1343801
+
Met
CAT
-
¡û
>C191018467
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2154850
2154774
-
Met
CAT
-
¡û
>W141525668
JHAC01000004
Deinococcota
Deinococcus phoenicis [JHAC]
173238
173314
+
Met
CAT
[ENA]
¡û
>W1911788304
QYCQ01000310
Deinococcota
Deinococcus sp. RM [QYCQ]
26931
27007
+
Met
CAT
[ENA]
¡û
>W1911802541
QYUJ01000030
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
9123
9199
+
Met
CAT
[ENA]
¡û
>W1810079086
PEKQ01000470
Alphaproteobacteria
Methylobacterium radiotolerans KUT39 [PEKQ]
1213
1137
-
Met
CAT
[ENA]
¡û
>SRA1003588
SRR002327.52194
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
20
96
+
Met
CAT
[SRA]
>W1810423332
PYSV01000007
Deinococcota
Deinococcus arcticus OD32 [PYSV]
117372
117448
+
Met
CAT
[ENA]
¡û
>C151081922
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
673854
673778
-
Met
CAT
[Ensembl]
¡û
>C161061589
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
1270847
1270923
+
Met
CAT
[Ensembl]
¡û
>W1610061577
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1255838
1255914
+
Met
CAT
[ENA]
¡û
>W1610638996
LIYN01000301
Deinococcota
Deinococcus sp. UR1 [LIYN]
578
654
+
Met
CAT
[ENA]
¡û
>W1610737911
LMOM01000032
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
371585
371661
+
Met
CAT
[ENA]
¡û
>W1710059242
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
1255838
1255914
+
Met
CAT
[ENA]
¡û
>W1710542269
FNZA01000006
Deinococcota
Deinococcus reticulitermitis [FNZA]
21210
21134
-
Met
CAT
[ENA]
¡û
>W1710605342
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
374426
374350
-
Met
CAT
[ENA]
¡û
>W1710774890
LIYN01000301
Deinococcota
Deinococcus sp. UR1 [LIYN]
578
654
+
Met
CAT
[ENA]
¡û
Identical group No.321783 (15 seq.)
>W131104569
APCS01000023
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
12521
12445
-
Met
CAT
[ENA]
¡û
>WENV180231989
OBCO01000049
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180232984
OBCP01000049
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
96547
96623
+
Met
CAT
[ENA]
¢þ
>WENV180569738
OCLR01000388
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
35720
35796
+
Met
CAT
[ENA]
¢þ
>WENV180570682
OCLS01000397
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
35708
35784
+
Met
CAT
[ENA]
¢þ
>WENV180571464
OCLT01000119
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180573570
OCLW01000047
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180639758
OCRL01000117
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>WENV180640579
OCRM01000047
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
96549
96625
+
Met
CAT
[ENA]
¢þ
>W141154784
AXLL01000113
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
10098
10174
+
Met
CAT
[ENA]
¡û
>PL191000843
CP031159
Deinococcus-Thermus
Deinococcus wulumuqiensis NEB 479 plasmid:pDrdA (CP031159)
152328
152252
-
Met
CAT
[ENA]
¡û
>W141561456
JHYL01000003
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
96585
96661
+
Met
CAT
[ENA]
¡û
>W141702063
JMLF01000008
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
110130
110054
-
Met
CAT
[ENA]
¡û
>C11107229
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1653060
1653136
+
Met
CAT
[Ensembl]
¡û
>C161082998
CP015082
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
163932
164008
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK