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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = CAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340304 (5 seq.)
>WENV181407656
OGCH01000002
[OGCH] hot springs metagenome; hot springs
307
231
-
fMet
CAT
[ENA]
¢þ
>WENV181407744
OGCH01000042
[OGCH] hot springs metagenome; hot springs
84773
84847
+
fMet
CAT
[ENA]
¢þ
>W09113498
ABYR01000002
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
410847
410923
+
Met
CAT
[ENA]
¡û
>C09104307
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1210434
1210358
-
Met
CAT
[Ensembl]
¡û
>C09104355
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1390740
1390664
-
Met
CAT
[Ensembl]
¡û
Identical group No.528495 (5 seq.)
>WENV181407702
OGCH01000024
[OGCH] hot springs metagenome; hot springs
77030
76955
-
Met
CAT
[ENA]
¢þ
>WENV181408185
OGCH01000910
[OGCH] hot springs metagenome; hot springs
4917
4842
-
Met
CAT
[ENA]
¢þ
>W09113477
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
66971
67046
+
Met
CAT
[ENA]
¡û
>C09104318
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
726701
726626
-
Met
CAT
[Ensembl]
¡û
>C09104364
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
897598
897523
-
Met
CAT
[Ensembl]
¡û
Identical group No.698809 (5 seq.)
>WENV181407818
OGCH01000096
[OGCH] hot springs metagenome; hot springs
35956
35882
-
Ile2
CAT
[ENA]
¢þ
>WENV181407883
OGCH01000176
[OGCH] hot springs metagenome; hot springs
18083
18009
-
Ile2
CAT
[ENA]
¢þ
>W09113524
ABYR01000005
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
32946
32872
-
Met
CAT
[ENA]
¡û
>C09104310
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1114939
1114865
-
Met
CAT
[Ensembl]
¡û
>C09104358
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1278258
1278184
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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