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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = TGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53886 (3 seq.)
>WENV181226294
OFDK01002529
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
429
518
+
Ser
TGA
[ENA]
¢þ
>WENV181408464
OGCH01003655
[OGCH] hot springs metagenome; hot springs
4473
4562
+
Ser
TGA
[ENA]
¢þ
>C09104301
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1470330
1470241
-
Ser
TGA
[Ensembl]
¡û
Identical group No.55299 (2 seq.)
>W09113492
ABYR01000002
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
145631
145720
+
Ser
TGA
[ENA]
¡û
>C09104349
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1655183
1655094
-
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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