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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = ACG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276816 (1 seq.)
>W1711412859
MGVC01000063
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
13533
13608
+
Arg
ACG
[ENA]
¡û
Identical group No.276820 (2 seq.)
>W1711413323
MGVQ01000102
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
20303
20376
+
Arg
ACG
[ENA]
¡û
>W1711413420
MGVT01000119
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
6454
6527
+
Arg
ACG
[ENA]
¡û
Identical group No.282936 (10 seq.)
>W1710917262
LNVX01000218
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
104711
104637
-
Arg
ACG
[ENA]
¡û
>W1710917332
LNVX01000508
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2649
2575
-
Arg
ACG
[ENA]
¡û
>W1710917378
LNVX01000857
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3206
3132
-
Arg
ACG
[ENA]
¡û
>C08011130
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
1091252
1091178
-
Arg
ACG
-
¡û
>WENV170715475
LQAB01001654
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
717
791
+
Arg
ACG
[ENA]
¢þ
>WENV170715537
LQAB01004664
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
8308
8234
-
Arg
ACG
[ENA]
¢þ
>WENV170715796
LQAB01015515
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1312
1386
+
Arg
ACG
[ENA]
¢þ
>WENV170715925
LQAB01020753
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1470
1544
+
Arg
ACG
[ENA]
¢þ
>C181002087
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
1079904
1079830
-
Arg
ACG
-
¡û
>ENV000881
AP009510
Environmental sample from ENV division of INSDC
1091253
1091175
-
Arg
ACG
[ENA]
Identical group No.327716 (3 seq.)
>WENV180663241
OCVV011114099
[OCVV] gut metagenome; gut
9936
10011
+
Arg
ACG
[ENA]
¢þ
>WENV180663242
OCVV011114099
[OCVV] gut metagenome; gut
9936
10011
+
Arg
ACG
[ENA]
¢þ
>C151053029
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1019098
1019023
-
Arg
ACG
[Ensembl]
¡û
Identical group No.350337 (6 seq.)
>W1711412700
MGUY01000053
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
2573
2498
-
Arg
ACG
[ENA]
¡û
>W1711412754
MGUZ01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
63111
63036
-
Arg
ACG
[ENA]
¡û
>W1711412938
MGVE01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
125155
125230
+
Arg
ACG
[ENA]
¡û
>W1711413075
MGVJ01000070
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
1859
1934
+
Arg
ACG
[ENA]
¡û
>W1711413117
MGVK01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
155039
154964
-
Arg
ACG
[ENA]
¡û
>W1711413125
MGVL01000002
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
125184
125259
+
Arg
ACG
[ENA]
¡û
Identical group No.361943 (1 seq.)
>W1711412898
MGVD01000143
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
11732
11807
+
Arg
ACG
[ENA]
¡û
Identical group No.361946 (1 seq.)
>W1711413200
MGVN01000065
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
5768
5842
+
Arg
ACG
[ENA]
¡û
Identical group No.361954 (3 seq.)
>W1711412944
MGVF01000017
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
1235
1309
+
Arg
ACG
[ENA]
¡û
>W1711413237
MGVN01000222
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
4123
4198
+
Arg
ACG
[ENA]
¡û
>W1711413258
MGVO01000052
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
40940
41014
+
Arg
ACG
[ENA]
¡û
Identical group No.362306 (2 seq.)
>W1710917243
LNVX01000034
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
364
438
+
Arg
ACG
[ENA]
¡û
>WENV170715594
LQAB01006940
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1208
1134
-
Arg
ACG
[ENA]
¢þ
Identical group No.423326 (1 seq.)
>W1711413368
MGVS01000023
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
19650
19575
-
Arg
ACG
[ENA]
¡û
Identical group No.429864 (1 seq.)
>W1711583349
MNXB01000091
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17238
17313
+
Arg
ACG
[ENA]
¡û
Identical group No.439044 (1 seq.)
>W1910727773
MGUS01000069
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
4846
4773
-
Arg
ACG
[ENA]
¡û
Identical group No.481764 (4 seq.)
>W1711411936
MGTR01000131
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
665
740
+
Arg
ACG
[ENA]
¡û
>W1910727588
MGUN01000024
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
81433
81508
+
Arg
ACG
[ENA]
¡û
>W1910727838
MGUU01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
81430
81505
+
Arg
ACG
[ENA]
¡û
>W1910727887
MGUW01000014
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
51240
51165
-
Arg
ACG
[ENA]
¡û
Identical group No.582266 (2 seq.)
>W1910727544
MGUM01000067
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
4238
4165
-
Arg
ACG
[ENA]
¡û
>W1910727806
MGUT01000076
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
65547
65474
-
Arg
ACG
[ENA]
¡û
Identical group No.592607 (3 seq.)
>WENV180255302
OBEQ010712343
[OBEQ] groundwater metagenome; groundwater
712
785
+
Arg
ACG
[ENA]
¢þ
>WENV180256734
OBEQ010847442
[OBEQ] groundwater metagenome; groundwater
77
4
-
Arg
ACG
[ENA]
¢þ
>W1910727687
MGUQ01000047
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
1549
1621
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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