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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CCA
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508738 (1 seq.)
>W1711413051
MGVI01000186
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_69_6 [MGVI]
1836
1763
-
Trp
CCA
[ENA]
¡û
Identical group No.552133 (2 seq.)
>W1711413198
MGVN01000039
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
176
250
+
Trp
CCA
[ENA]
¡û
>WENV180591953
OCOV01144327
[OCOV] marine metagenome; ENVO:01000301
142
216
+
Trp
CCA
[ENA]
¢þ
Identical group No.564182 (2 seq.)
>W1711412670
MGUL01000119
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
287
362
+
Trp
CCA
[ENA]
¡û
>W1711413340
MGVR01000141
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
263
338
+
Trp
CCA
[ENA]
¡û
Identical group No.652908 (1 seq.)
>W1910727630
MGUO01000316
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
262
336
+
Trp
CCA
[ENA]
¡û
Identical group No.656686 (2 seq.)
>W1711412169
MGTX01000019
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
90832
90758
-
Trp
CCA
[ENA]
¡û
>W1711412524
MGUH01000113
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
12789
12715
-
Trp
CCA
[ENA]
¡û
Identical group No.656790 (4 seq.)
>W1711411987
MGTT01000009
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
336
409
+
Trp
CCA
[ENA]
¡û
>W1711412328
MGUC01000001
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
274
347
+
Trp
CCA
[ENA]
¡û
>W1711412786
MGVA01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
33703
33630
-
Trp
CCA
[ENA]
¡û
>W1711412983
MGVG01000025
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
76186
76113
-
Trp
CCA
[ENA]
¡û
Identical group No.660483 (2 seq.)
>C08004667
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
1588750
1588679
-
Trp
CCA
[Ensembl]
¡û
>W09107450
ABIQ01000001
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
44556
44630
+
Trp
CCA
[ENA]
¡û
Identical group No.682090 (12 seq.)
>W1712038744
NFJD01000005
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
384
458
+
Trp
CCA
[ENA]
¡û
>WENV180231278
OBCN01006415
[OBCN] human gut metagenome; human gut
935
861
-
Trp
CCA
[ENA]
¢þ
>WENV180404575
OBSA01009833
[OBSA] human gut metagenome; ENVO:feces
1026
952
-
Trp
CCA
[ENA]
¢þ
>WENV181647864
OGNQ01001216
[OGNQ] metagenome; Human gut stool
14423
14497
+
Trp
CCA
[ENA]
¢þ
>WENV181690966
OGOZ01001362
[OGOZ] human gut metagenome; faeces
7912
7986
+
Trp
CCA
[ENA]
¢þ
>WENV182658721
OJML01000465
[OJML] human gut metagenome; feces
24035
23961
-
Trp
CCA
[ENA]
¢þ
>WENV183071202
OLIS01004098
[OLIS] human gut metagenome; feces
400
474
+
Trp
CCA
[ENA]
¢þ
>WENV183640318
OQVL01003081
[OQVL] human gut metagenome; human gut
4521
4595
+
Trp
CCA
[ENA]
¢þ
>WENV183643077
OQVO01001231
[OQVO] human gut metagenome; human gut
1211
1285
+
Trp
CCA
[ENA]
¢þ
>WENV183645357
OQVQ01004715
[OQVQ] human gut metagenome; human gut
1806
1880
+
Trp
CCA
[ENA]
¢þ
>WENV183654412
OQWA01035180
[OQWA] human gut metagenome; human gut
503
429
-
Trp
CCA
[ENA]
¢þ
>WENV183656960
OQWI01001059
[OQWI] human gut metagenome; human gut
11218
11292
+
Trp
CCA
[ENA]
¢þ
Identical group No.712126 (1 seq.)
>W1910727916
MGUX01000011
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
27576
27504
-
Trp
CCA
[ENA]
¡û
Identical group No.751127 (2 seq.)
>WENV180267084
OBEQ011814442
[OBEQ] groundwater metagenome; groundwater
566
492
-
Trp
CCA
[ENA]
¢þ
>W1910727721
MGUR01000012
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
350
422
+
Trp
CCA
[ENA]
¡û
Identical group No.757046 (1 seq.)
>W1711413365
MGVS01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
538
609
+
Trp
CCA
[ENA]
¡û
Identical group No.760917 (2 seq.)
>WENV183689620
ORMF011466521
[ORMF] groundwater metagenome; groundwater
640
569
-
Trp
CCA
[ENA]
¢þ
>W1910727782
MGUT01000002
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
375
447
+
Trp
CCA
[ENA]
¡û
Identical group No.761743 (1 seq.)
>W1711583360
MNXB01000130
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
6411
6339
-
Trp
CCA
[ENA]
¡û
Identical group No.779991 (7 seq.)
>W1711395559
METT01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYA12_FULL_52_29 [METT]
713936
713864
-
Trp
CCA
[ENA]
¡û
>W1711395774
METY01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYA2_FULL_51_19 [METY]
713936
713864
-
Trp
CCA
[ENA]
¡û
>W1711395805
METZ01000003
Unclassified
candidate division WOR-1 bacterium RIFOXYB12_FULL_52_16 [METZ]
288204
288276
+
Trp
CCA
[ENA]
¡û
>W1711395998
MEUD01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYB2_FULL_45_9 [MEUD]
713936
713864
-
Trp
CCA
[ENA]
¡û
>W1711396130
MEUG01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYC12_FULL_54_18 [MEUG]
713936
713864
-
Trp
CCA
[ENA]
¡û
>W1711413301
MGVQ01000012
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
9174
9244
+
Trp
CCA
[ENA]
¡û
>W1711413408
MGVT01000060
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
9648
9578
-
Trp
CCA
[ENA]
¡û
Identical group No.781051 (1 seq.)
>W1711412860
MGVC01000063
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
29206
29134
-
Trp
CCA
[ENA]
¡û
Identical group No.782528 (3 seq.)
>C08011118
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
349656
349726
+
Trp
CCA
-
¡û
>C181002075
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
340716
340786
+
Trp
CCA
-
¡û
>ENV000855
AP009510
Environmental sample from ENV division of INSDC
349656
349729
+
Trp
CCA
[ENA]
Identical group No.787331 (4 seq.)
>W1711411937
MGTR01000132
Elusimicrobiota
Elusimicrobia bacterium GWA2_38_7 [MGTR]
13802
13729
-
Trp
CCA
[ENA]
¡û
>W1910727555
MGUN01000001
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
41946
41875
-
Trp
CCA
[ENA]
¡û
>W1910727845
MGUU01000021
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
41944
41873
-
Trp
CCA
[ENA]
¡û
>W1910727911
MGUW01000023
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
41946
41875
-
Trp
CCA
[ENA]
¡û
Identical group No.788771 (4 seq.)
>W1711411954
MGTS01000020
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
526
598
+
Trp
CCA
[ENA]
¡û
>W1711412308
MGUB01000054
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
278
350
+
Trp
CCA
[ENA]
¡û
>WENV183668850
ORJL010780214
[ORJL] groundwater metagenome; groundwater
190
117
-
Trp
CCA
[ENA]
¢þ
>W1910727638
MGUP01000120
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_61_10 [MGUP]
5262
5189
-
Trp
CCA
[ENA]
¡û
Identical group No.793108 (6 seq.)
>W1711412047
MGTU01000022
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
436
509
+
Trp
CCA
[ENA]
¡û
>W1711412224
MGTZ01000017
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
1060
987
-
Trp
CCA
[ENA]
¡û
>W1711412292
MGUA01000039
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
14560
14633
+
Trp
CCA
[ENA]
¡û
>W1711413009
MGVH01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
17629
17556
-
Trp
CCA
[ENA]
¡û
>W1711581876
MNUR01000023
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
557
630
+
Trp
CCA
[ENA]
¡û
>WENV170661761
JXWV01111103
[JXWV] soil metagenome; rice field; organic FYM Plot
149
220
+
Trp
CCA
[ENA]
¢þ
Identical group No.802868 (5 seq.)
>W1711412692
MGUY01000020
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
2098
2169
+
Trp
CCA
[ENA]
¡û
>W1711412721
MGUZ01000005
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
285
356
+
Trp
CCA
[ENA]
¡û
>W1711412906
MGVE01000006
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
288
359
+
Trp
CCA
[ENA]
¡û
>W1711413088
MGVK01000001
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
201237
201166
-
Trp
CCA
[ENA]
¡û
>W1711413155
MGVL01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
201229
201158
-
Trp
CCA
[ENA]
¡û
Identical group No.806602 (2 seq.)
>W1710917272
LNVX01000243
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
6341
6269
-
Trp
CCA
[ENA]
¡û
>WENV170715683
LQAB01010914
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2113
2041
-
Trp
CCA
[ENA]
¢þ
Identical group No.806616 (2 seq.)
>W1710917289
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
71040
70968
-
Trp
CCA
[ENA]
¡û
>WENV170715847
LQAB01017548
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
27639
27567
-
Trp
CCA
[ENA]
¢þ
Identical group No.806619 (2 seq.)
>W1710917274
LNVX01000258
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2582
2510
-
Trp
CCA
[ENA]
¡û
>WENV170715873
LQAB01018501
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
4474
4402
-
Trp
CCA
[ENA]
¢þ
Identical group No.818210 (1 seq.)
>W1910727696
MGUQ01000069
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
18420
18350
-
Trp
CCA
[ENA]
¡û
Identical group No.824011 (1 seq.)
>C151053033
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
962822
962749
-
Trp
CCA
[Ensembl]
¡û
Identical group No.824275 (1 seq.)
>W1711413176
MGVM01000107
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_48_7 [MGVM]
7082
7011
-
Trp
CCA
[ENA]
¡û
Identical group No.824279 (1 seq.)
>W1711413274
MGVO01000108
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
5216
5145
-
Trp
CCA
[ENA]
¡û
Identical group No.824319 (1 seq.)
>W1711581940
MNUS01000137
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
482
553
+
Trp
CCA
[ENA]
¡û
Identical group No.828546 (1 seq.)
>W1711583339
MNXB01000051
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
2147
2220
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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